Revision as of 17:26, 13 August 2006

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FAMSBASE
Who:	Hideaki Umeyama, Kitasato University Mitiko Go, Nagahama Institute of Bio-Science and Technology Japan
What:	Protein structure models by homology modeling
Where:	FAMSBASE
Updates
Upcoming events	n/a
Web Services

About FAMSBASE

Content

FAMSBASE^[1] provides automated homology modeling of protein structures.

Using FAMSBASE

FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models.

Browsing

Following the public login link, many queries take you to a page that asks you to create an account. However, without creating an account, you can view a list of Proteins with FAMSBASE models. This can be restricted to a particular genome by clicking a checkbox for the desired genome. The output gives psiblast scores and links to PDB and GTOP.

Searching

Usage examples

Add links to additional pages describing success stories here.

Technology

Web Services/API

Discussion

References

↑ Yamaguchi, A et al. (2003) Enlarged FAMSBASE: protein 3D structure models of genome sequences for 41 species. Nucleic Acids Res. 31 463-8 PubMed

External Links

FAMSBASE URL: http://daisy.nagahama-i-bio.ac.jp/Famsbase/

Discussion of FAMSBASE on other websites

[PMID:12520053-1] Yamaguchi, A et al. (2003) Enlarged FAMSBASE: protein 3D structure models of genome sequences for 41 species. Nucleic Acids Res. 31 463-8 PubMed

[1]

@@ Line 32: / Line 32: @@
 FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models.
 ==Browsing==
+Following the public login link, many queries take you to a page that asks you to create an account.  However, without creating an account, you can view a list of Proteins with FAMSBASE models.  This can be restricted to a particular genome by clicking a checkbox for the desired genome.  The output gives psiblast scores and links to [[PDB]] and [[GTOP]].
 ==Searching==
 ==Usage examples==

FAMSBASE: Difference between revisions