amn:Gene: Difference between revisions

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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!CGSC Mutation ID #
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!Resource!!Resource Type!!Source!!Notes/Reference
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JW1963
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Plasmid clone
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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[[PMID:16769691]]<ref name=PMID:16769691/>
Status:Clone OK
Primer 1:GCCAATAATAAGGGCTCCGGTCT
Primer 2:CCTCGGAACGGCGGCTCATTAAA
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==Links==
==Links==
 
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__NOTOC__
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[[Category:Gene List:MG1655]][[Category:Gene List:W3110]][[Category:Genes in the Keio knockout collection]][[Category:Genes in the ASKA clone collection]]</protect></noinclude>

Revision as of 06:42, 25 July 2007


Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

Standard name

amn

Mnemonic
Synonyms

ECK1977, b1982, JW1963[1]

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

44.25 minutes 

MG1655: 2053085..2054539
gbrowse_img.php?coord=2052085..2055539&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 2057198..2058652
gbrowse_img.php?coord=2056198..2059652&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

Feature type Location Description
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference CGSC Mutation ID #

 

 

 

 

 

 

 

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

Resource Resource Type Source Notes/Reference

JW1963

Plasmid clone

Shigen

PMID:16769691[2]

Status:Clone OK

Primer 1:GCCAATAATAAGGGCTCCGGTCT

Primer 2:CCTCGGAACGGCGGCTCATTAAA

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10039

EchoBASE (EcoliWiki Page)

EchoBASE:EB0037

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1982

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C2444

EcoGene (EcoliWiki Page)

EcoGene:EG10039

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:AMN

CGSC (EcoliWiki Page)

CGSC:17764

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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References

See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
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