mlaB:Gene: Difference between revisions

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Fixing Gbrowse links (bug #119)
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Refreshing information from GenBank record NC_000913
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!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK3180, b3191, JW5535'', yrbB<ref name='LIB:Riley_2006'/>
''ECK3180, b3191, JW5535'', yrbB<ref name='LIB:Riley_2006'/>, JW5535, yrbB''


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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7658 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=G7658 EcoCyc]
{{GBrowseLink|MG1655|NC_000913|3333985|3336278|GBrowse(MG1655)}}
{{GBrowseLink|ecoli|NC_000913|3333985|3336278|GBrowse(MG1655)}}
   
   
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*[http://biocyc.org/ECOLI/sequence?object=G7658 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=G7658 EcoCyc Sequence Dump]  
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{{GBrowseLink|BW2952|NC_012759|3222133|3222426|GBrowse (BW2952)}}
{{GBrowseLink|BW2952|012759|3222133|NC_3222426|GBrowse (BW2952)}}
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{{GBrowseLink|W3110|AC_000091|3335818|3338111|GBrowse(W3110)}}  
{{GBrowseLink|ecoli_W3110|AC_000091|3335818|3338111|GBrowse(W3110)}}  
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{{GBrowseLink|DH10B|NC_010473|3432144|3433609|GBrowse(DH10B)}}
{{GBrowseLink|ecoli_DH10B|NC_010473|3432144|3433609|GBrowse(DH10B)}}
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Primer 2:CCACGAGGCAGAACATCAGCAGG  
Primer 2:CCACGAGGCAGAACATCAGCAGG  
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[[:Category:Kohara_Phage:14F11|14F11]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=521 Genobase]
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PMID:3038334
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[[:Category:Kohara_Phage:7E3|7E3]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=522 Genobase]
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PMID:3038334
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7658 ECOCYC:G7658]
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Escherichia coli str. K-12 substr. MG1655
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/gene?term=947954 GeneID:947954]
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Escherichia coli str. K-12 substr. MG1655


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Revision as of 19:59, 24 September 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

mlaB

Mnemonic
Synonyms

ECK3180, b3191, JW5535, yrbB[1], JW5535, yrbB

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

71.88 minutes 

MG1655: 3335278..3334985
<gbrowseImage> name=NC_000913:3334985..3335278 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3272491..3272198
<gbrowseImage> name=NC_012967:3272198..3272491 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3222133..3222426
<gbrowseImage> name=NC_012759:3222133..3222426 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3337111..3336818
<gbrowseImage> name=AC_000091:3336818..3337111 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3433023..3432730
<gbrowseImage> name=NC_010473:3432730..3433023 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5535

Plasmid clone

Shigen

PMID:16769691[2]

Status:Clone OK

Primer 1:GCCAGCGAGTCACTGAGCTGGATgca

Primer 2:CCACGAGGCAGAACATCAGCAGG

14F11

Kohara Phage

Genobase

PMID:3038334[3]

7E3

Kohara Phage

Genobase

PMID:3038334[3]

sfsB203::Tn10

Linked marker

CAG12072 = CGSC7440[4]

est. P1 cotransduction: 89% [5]
Synonyms:zgj-203::Tn10, zha-203::Tn10

zhc-6::Tn10

Linked marker

CAG12153 = CGSC7442[4]

est. P1 cotransduction: 33% [5]
Synonyms:zha-6::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7658

EchoBASE (EcoliWiki Page)

EchoBASE:EB2649

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3191

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C3950

EcoGene (EcoliWiki Page)

EcoGene:EG12797

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YRBB

ASAP (EcoliWikiPage)

ASAP:ABE-0010487

EcoCyc (EcoliWiki Page)

ECOCYC:G7658

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947954

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  3. ↑ 3.0 3.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  4. ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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