micF:Gene: Difference between revisions
Adding section & Genetic interactions table to Gene pages. |
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MG1655: 2311106..2311198<br /><gbrowseImage> | MG1655: 2311106..2311198<br /><gbrowseImage> | ||
name=NC_000913:2311106..2311198 | name=NC_000913:2311106..2311198 | ||
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W3110: 2316418..2316510<br /><gbrowseImage> | W3110: 2316418..2316510<br /><gbrowseImage> | ||
name=AC_000091:2316418..2316510 | name=AC_000091:2316418..2316510 | ||
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DH10B: 2402094..2402186<br /><gbrowseImage> | DH10B: 2402094..2402186<br /><gbrowseImage> | ||
name=NC_010473:2402094..2402186 | name=NC_010473:2402094..2402186 | ||
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Revision as of 22:29, 24 June 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
micF |
|---|---|
| Mnemonic |
mRNA interfering cRNA |
| Synonyms |
ECK2208, b4439, JWR0043, stc, IS113[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
49.81 minutes |
MG1655: 2311106..2311198 |
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NC_012759: 2196911..2197003 |
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|
W3110 |
|
W3110: 2316418..2316510 |
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|
DH10B: 2402094..2402186 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
micF1 (del) |
Resistant to |
lowered the resistance of wild-type bacteria to nalidixic acid, ampicillin and tetracycline |
| ||||
| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
Plasmid clone |
Status: Primer 1: Primer 2: | ||
|
Linked marker |
est. P1 cotransduction: 71% [5] | ||
|
Linked marker |
est. P1 cotransduction: 74% [5] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Chou, JH et al. (1993) Posttranscriptional repression of Escherichia coli OmpF protein in response to redox stress: positive control of the micF antisense RNA by the soxRS locus. J. Bacteriol. 175 1026-31 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
- ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).