mlaB:Gene: Difference between revisions

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Adding section & Genetic interactions table to Gene pages.
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|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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===Notes===
===Notes===


==Genetic Interactions==
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===Notes===


==Genetic Resources==
==Genetic Resources==

Revision as of 16:46, 24 June 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

mlaB

Mnemonic
Synonyms

ECK3180, b3191, JW5535, yrbB[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

71.88 minutes 

MG1655: 3335278..3334985
<gbrowseImage> name=NC_000913:3334985..3335278 source=ecoli preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3272491..3272198
<gbrowseImage> name=NC_012967:3272198..3272491 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3222133..3222426
<gbrowseImage> name=NC_012759:3222133..3222426 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3337111..3336818
<gbrowseImage> name=AC_000091:3336818..3337111 source=ecoli_W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3433023..3432730
<gbrowseImage> name=NC_010473:3432730..3433023 source=ecoli_DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5535

Plasmid clone

Shigen

PMID:16769691[2]

Status:Clone OK

Primer 1:GCCAGCGAGTCACTGAGCTGGATgca

Primer 2:CCACGAGGCAGAACATCAGCAGG

sfsB203::Tn10

Linked marker

CAG12072 = CGSC7440[3]

est. P1 cotransduction: 89% [4]
Synonyms:zgj-203::Tn10, zha-203::Tn10

zhc-6::Tn10

Linked marker

CAG12153 = CGSC7442[3]

est. P1 cotransduction: 33% [4]
Synonyms:zha-6::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7658

EchoBASE (EcoliWiki Page)

EchoBASE:EB2649

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3191

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C3950

EcoGene (EcoliWiki Page)

EcoGene:EG12797

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YRBB

ASAP (EcoliWikiPage)

ASAP:ABE-0010487


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  3. ↑ 3.0 3.1 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.0 4.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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