Sequenced E. coli Genomes: Difference between revisions
Table edited by Bmcintosh via TableEdit |
Table edited by Bmcintosh via TableEdit |
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 DOE Joint Genome Institute]<br/> | [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 DOE Joint Genome Institute]<br/> | ||
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 Entrez Genome Project] <br/> | [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 Entrez Genome Project] <br/> | ||
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''E. coli'' BW2952 MC4100(MuLac) | [[BW2952|''E. coli'' BW2952 MC4100(MuLac)]] | ||
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complete | complete | ||
Revision as of 20:40, 23 July 2010
EcoliWiki plans to create gene lists for all available laboratory E. coli K-12, B, and C strains. Although pathogenic strains of E. coli are not the focus of EcoliWiki, numerous strains of E. coli, non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and from where. Please add or edit any strains you know are being sequenced or are finished.
| Strain | Sequencing status | Accessions (if applicable) | In EcoliWiki | Comments |
|---|---|---|---|---|
|
complete |
yes |
|||
|
complete |
yes |
|||
|
complete |
yes |
This genome has now been incorporated into EcoliWiki. | ||
|
complete |
yes |
Information about the genes of this E. coli B strain is now available from EcoliWiki
International E. coli B Consortium | ||
|
complete |
not yet |
Will be included in EcoliWiki when publically available. | ||
|
E. coli 101-1 |
in progress |
no |
JCVI
Enteroaggregative. | |
|
E. coli 53638 |
in progress |
no |
JCVI | |
|
E. coli B171 |
in progress |
no |
JCVI | |
|
E. coli B7A |
in progress |
no |
JCVI | |
|
E. coli E110019 |
in progress |
no |
JCVI Atypical enteropathogenic. | |
|
E. coli E22 |
in progress |
no |
JCVI | |
|
E. coli E24377A |
complete |
no |
JCVI | |
|
E. coli F11 |
in progress |
no |
JCVI | |
|
E. coli HS |
complete |
no |
JCVI | |
|
E. coli SMS-3-5 |
complete |
no |
PMID:18708504[4]
| |
|
E. coli O157:H7 EC4024 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 EC4042 |
in progress |
no |
JCVI
| |
|
E. coli O157:H7 EC4045 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 EC4076 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 EC4113 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 EC4115 |
complete |
no |
JCVI | |
|
E. coli O157:H7 EC4196 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 EC4206 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 EC4401 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 EC4486 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 EC4501 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 EC508 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 TW14359 |
complete |
no |
Entrez Genome Project | |
|
E. coli O157:H7 EC869 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 FRIK966 |
in progress |
no |
MBRI | |
|
E. coli O157:H7 TW14588 |
in progress |
no |
JCVI | |
|
E. coli O157:H7 GZ-021210/cattle |
in progress |
no |
Entrez Genome Project | |
|
E. coli O157:H7 |
complete |
no |
PMID:11258796[5]
| |
|
E. coli APEC O1 |
complete |
no |
PMID:17293413[6]
| |
|
E. coli UTI89 |
complete |
no |
||
|
E. coli 042 |
complete |
no |
Sanger Institute | |
|
E. coli 536 |
complete |
no |
PMID:16879640[8]
| |
|
E. coli RS218 |
in progress |
no |
PMID:16988236[9]
| |
|
E. coli CFT073 |
complete |
no |
PMID:12471157[10]
| |
|
complete |
not yet |
E. coli Crooks strain (sometimes misnamed as E. coli B strain (see page for ATCC 8739)
| ||
|
E. coli E2348/69 |
complete |
no |
Sanger Institute | |
|
E. coli F18+ |
in progress |
no |
||
|
E. coli 789 A/C 1 |
in progress |
no |
||
|
E. coli LW1655F+ |
in progress |
no |
||
|
E. coli NC-7 |
in progress |
not yet |
Entrez Genome Project | |
|
E. coli O157:H7 EDL933 |
complete |
no |
Enteropathogen Resource Integration Center (ERIC) Enterohemorrhagic. | |
|
E. coli SE11 |
complete |
no |
Entrez Genome Project | |
|
E. coli 078:H11 H10407 |
complete |
no |
Enteropathogen Resource Integration Center (ERIC) Enterohemorrhagic. | |
|
E. coli W |
in progress |
no |
||
|
E. coli c7122 |
in progress |
no |
||
|
E. coli S88 |
complete |
no |
Serotype O45:K1 strain, isolated from a case of meningitis. | |
|
E. coli ED1a |
complete |
no |
Avirulent serogroup O81. | |
|
E. coli IAI1 |
complete |
no |
Serogroup O8. | |
|
E. coli IAI39 |
complete |
no |
Serotype O7:K1. | |
|
E. coli 55989 |
complete |
no |
Pathogenic strain. | |
|
complete |
yes |
|||
|
E.coli UMN026 |
complete |
no |
Pathogenic strain serotype O17:K52:H18 | |
|
E.coli O103:H2 str. 12009 |
complete |
no |
Pathogenic. | |
|
E.coli O111:H- str. 11128 |
complete |
no |
Pathogenic. | |
|
E. coli O127:H6 str. E2348/69 |
complete |
no |
Pathogenic. | |
|
E. coli O55:H7 CB9615 |
complete |
no |
| |
| edit table |
- ↑ Blattner, FR et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 1453-62 PubMed
- ↑ Hayashi, K et al. (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 2006.0007 PubMed
- ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
- ↑ Fricke, WF et al. (2008) Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J. Bacteriol. 190 6779-94 PubMed
- ↑ Hayashi, T et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8 11-22 PubMed
- ↑ Johnson, TJ et al. (2007) The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. J. Bacteriol. 189 3228-36 PubMed
- ↑ Chen, SL et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc. Natl. Acad. Sci. U.S.A. 103 5977-82 PubMed
- ↑ Hochhut, B et al. (2006) Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. Mol. Microbiol. 61 584-95 PubMed
- ↑ Teng, CH et al. (2006) Effects of ompA deletion on expression of type 1 fimbriae in Escherichia coli K1 strain RS218 and on the association of E. coli with human brain microvascular endothelial cells. Infect. Immun. 74 5609-16 PubMed
- ↑ Welch, RA et al. (2002) Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 99 17020-4 PubMed
- ↑ 11.0 11.1 Touchon, M et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5 e1000344 PubMed
- ↑ Ferenci, T et al. (2009) Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. J. Bacteriol. 191 4025-9 PubMed
- ↑ 13.0 13.1 Ogura, Y et al. (2009) Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 106 17939-44 PubMed
- ↑ Iguchi, A et al. (2009) Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J. Bacteriol. 191 347-54 PubMed