yadI:Gene: Difference between revisions
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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12322 EcoCyc] | *[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG12322 EcoCyc] | ||
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{{GBrowseLink|BW2952|012759|144576|NC_145016|GBrowse (BW2952)}} | {{GBrowseLink|BW2952|012759|144576|NC_145016|GBrowse (BW2952)}} | ||
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{{GBrowseLink|ecoli_W3110|AC_000091|143577|146017|GBrowse(W3110)}} | {{GBrowseLink|ecoli_W3110|AC_000091|143577|146017|GBrowse(W3110)}} | ||
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{{GBrowseLink|ecoli_DH10B|NC_010473|117801|120001|GBrowse(DH10B)}} | {{GBrowseLink|ecoli_DH10B|NC_010473|117801|120001|GBrowse(DH10B)}} | ||
Revision as of 22:17, 26 July 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
yadI |
|---|---|
| Mnemonic |
Systematic nomenclature |
| Synonyms |
ECK0128, b0129, JW0125, agaX[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
3.12 minutes |
MG1655: 144577..145017 |
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NC_012967: 147380..147820 |
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NC_012759: 144576..145016 |
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|
W3110 |
|
W3110: 144577..145017 |
||
|
DH10B: 118681..119121 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔyadI (Keio:JW0125) |
deletion |
deletion |
|||||
|
ΔyadI746::kan |
| ||||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0125 |
Plasmid clone |
Status:Clone OK Primer 1:GCCTTAGGTTGGGTAATTACCTG Primer 2:CCATACTCATACAAATTATGTTT | |
|
leuO3051::Tn10 |
Linked marker |
est. P1 cotransduction: 4% [5] | |
|
Linked marker |
est. P1 cotransduction: 88% [5] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).