asnV:Gene: Difference between revisions

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Revision as of 20:20, 26 July 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

asnV

Mnemonic

Asparagine

Synonyms

ECK1984, b1989, JWR0041[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

44.41 minutes 

MG1655: 2060284..2060359
<gbrowseImage> name=NC_000913:2060284..2060359 source=ecoli preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2000260..2000335
<gbrowseImage> name=NC_012967:2000260..2000335 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1952767..1952842
<gbrowseImage> name=NC_012759:1952767..1952842 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2064397..2064472
<gbrowseImage> name=AC_000091:2064397..2064472 source=ecoli_W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2151292..2151367
<gbrowseImage> name=NC_010473:2151292..2151367 source=ecoli_DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[2]

Status:

Primer 1:

Primer 2:

zed-3069::Tn10

Linked marker

CAG18451 = CGSC7395[3]

est. P1 cotransduction: 42% [4]

zef-3129::Tn10

Linked marker

CAG12099 = CGSC7397[3]

est. P1 cotransduction: 43% [4]
Synonyms:zee-3129::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG30022

EchoBASE (EcoliWiki Page)

EchoBASE:EB4185

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1989

EcoGene (EcoliWiki Page)

EcoGene:EG30022

CGSC (EcoliWiki Page)

CGSC:17743


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  3. ↑ 3.0 3.1 CGSC: The Coli Genetics Stock Center
  4. ↑ 4.0 4.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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