setA:Gene: Difference between revisions
Data loaded by TableEdit_Loader. |
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php |
||
| Line 95: | Line 95: | ||
|- | |- | ||
| | | | ||
[[BW2952]] | |||
| | | | ||
| | | | ||
NC_012759: 77620..78798<br />{{GBrowseFigureByCoord|77620|78798|BW2952|NC_012759}} | |||
| | | | ||
{{GBrowseLink| | {{GBrowseLink|BW2952|012759|77620|NC_78798|GBrowse (BW2952)}} | ||
| | | | ||
{{GBrowseFastaLink| | {{GBrowseFastaLink|BW2952|012759|77620|NC_78798|FASTA Dump}} | ||
|- | |- | ||
| | | | ||
W3110 | |||
| | | | ||
| |||
| | | | ||
W3110: 77621..78799<br />{{GBrowseFigureByCoord|77621|78799|ecoli_W3110|W3110}} | |||
| | | | ||
{{GBrowseLink| | {{GBrowseLink|ecoli_W3110|AC_000091|76621|79799|GBrowse(W3110)}} | ||
| | | | ||
{{GBrowseFastaLink| | {{GBrowseFastaLink|ecoli_W3110|AC_000091|77621|78799|FASTA Dump}} | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
| Line 136: | Line 136: | ||
{| id="H46a9a7d03aec3" class=" tableEdit Gene_sequence_features_table" | {| id="H46a9a7d03aec3" class=" tableEdit Gene_sequence_features_table" | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!|Feature | !|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10721.H46a9a7d03aec3&page=10721&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || || | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10721.H46a9a7d03aec3&page=10721&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || || || || || | ||
|} | |} | ||
<!--box uid=421aa90e079fa326b6494f812ad13e79.10721.H46a9a7d03aec3--> | <!--box uid=421aa90e079fa326b6494f812ad13e79.10721.H46a9a7d03aec3--> | ||
Revision as of 23:28, 10 May 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
setA |
|---|---|
| Mnemonic |
Sugar efflux transporter |
| Synonyms |
ECK0072, b0070, JW0069, yabM[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
1.67 minutes |
MG1655: 77621..78799 |
||
|
NC_012967: 80425..81603 |
||||
|
NC_012759: 77620..78798 |
||||
|
W3110 |
|
W3110: 77621..78799 |
||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔsetA (Keio:JW0069) |
deletion |
deletion |
|||||
|
ΔsetA777::kan |
| ||||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW0069 |
Plasmid clone |
Status:Clone OK Primer 1:GCCATCTGGATAATGACGATGGC Primer 2:CCAACGTCTTTAACCTTTGCGGT | |
|
Linked marker |
est. P1 cotransduction: 14% [5] | ||
|
leuO3051::Tn10 |
Linked marker |
est. P1 cotransduction: 82% [5] | |
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).