bcsC:Gene: Difference between revisions

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!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes


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Revision as of 22:20, 10 May 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

bcsC

Mnemonic

Bacterial cellulose synthesis

Synonyms

ECK3515, b3530, JW5942, yhjL[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

79.4 minutes 

MG1655: 3687196..3683723
gbrowse_img.php?coord=3683723..3687196&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 3618665..3615192
gbrowse_img.php?coord=3615192..3618665&genome=REL606&name=NC_012967&trackset=0&width=300&.png

BW2952

NC_012759: 3572217..3575639
gbrowse_img.php?coord=3572217..3575639&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

W3110

 

W3110: 3951242..3954715
gbrowse_img.php?coord=3951242..3954715&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 3784941..3781468
gbrowse_img.php?coord=3781468..3784941&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔbcsC (Keio:JW5942)

deletion

deletion

PMID:16738554[2]

Shigen


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:

zhg-50::Tn10

Linked marker

CAG18450 = CGSC7450[4]

est. P1 cotransduction: % [5]
Synonyms:zhf-50::Tn10, zhf-5::Tn10

zic-4901::Tn10

Linked marker

CAG18492 = CGSC7457[4]

est. P1 cotransduction: % [5]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12257

EchoBASE (EcoliWiki Page)

EchoBASE:EB2166

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3530

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4342

EcoGene (EcoliWiki Page)

EcoGene:EG12257

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YHJL

ASAP (EcoliWikiPage)

ASAP:ABE-0011538


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  4. ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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