trpA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''trpA''  
''trpA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1254, b1260, JW1252, try, tryp''<ref name='LIB:Riley_2006'/>
''ECK1254, b1260, JW1252, try, tryp''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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tryptophan synthase, &alpha; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
tryptophan synthase, &alpha; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Tryptophan synthase, alpha subunit<ref name='LIB:EcoGene'/>
Tryptophan synthase, alpha subunit<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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tryptophan synthase, alpha subunit<ref name='LIB:Riley_2006'/>, B1260<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Try<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TrpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, &alpha; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TSase &alpha;<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
tryptophan synthase, alpha subunit<ref name='LIB:Riley_2006'/>, B1260<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Try<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TrpA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, &alpha; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TSase &alpha;<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0043199 sulfate binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0004834 tryptophan synthase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0009073 aromatic amino acid family biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0000162 tryptophan biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:trpCBA|trpCBA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:trpLEDCBA|trpLEDCBA]]<ref name='LIB:EcoCyc10.6'/>, OP00094, trp  
transcription unit(s): [[:Category:Txn_unit:trpCBA|trpCBA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:trpLEDCBA|trpLEDCBA]]<ref name='LIB:EcoCyc10.6'/>, OP00094, trp  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=trpA&loc=MG1655:1315246..1314440,W3110:1318936..1318130,DH10B:1404642..1403836,REL606:1314816..1314010 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1314816&end=1314010&gene=trpA&aa=meryeslfaqlkerkegafvpfvtlgdpgieqslkiidtlieagadalelgipfsdpladgptiqnatlrafaagvtpaqcfemlalirqkhptipigllmyanlvfnkgidefyaqcekvgvdsvlvadvpveesapfrqaalrhnvapificppnadddllrqiasygrgytyllsragvtgaenraalplnhlvaklkeynaapplqgfgisapdqvkaaidagaagaisgsaivkiieqhinepekmlaalkvfvqpmkaatrs Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=trpA+AND+escherichia+coli Pubmed(trpA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=trpA Textpresso(trpA)]


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Revision as of 23:27, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

trpA

Gene Synonym(s)

ECK1254, b1260, JW1252, try, tryp[1]

Product Desc.

tryptophan synthase, α subunit[2][3];

Component of tryptophan synthase[2][3]

Tryptophan synthase, alpha subunit[4]

Product Synonyms(s)

tryptophan synthase, alpha subunit[1], B1260[2][1], Try[2][1], TrpA[2][1], α subunit[2][1], TSase α[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): trpCBA[2], trpLEDCBA[2], OP00094, trp

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(trpA)    Textpresso(trpA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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otherPDB (S. typhimurium): 1BKS.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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