rpsQ:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rpsQ''  
''rpsQ''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3298, b3311, JW3273, neaA, nea''<ref name='LIB:Riley_2006'/>
''ECK3298, b3311, JW3273, neaA, nea''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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30S ribosomal subunit protein S17<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
30S ribosomal subunit protein S17<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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30S ribosomal subunit protein S17<ref name='LIB:EcoGene'/>
30S ribosomal subunit protein S17<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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30S ribosomal subunit protein S17<ref name='LIB:Riley_2006'/>, B3311<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NeaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RpsQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
30S ribosomal subunit protein S17<ref name='LIB:Riley_2006'/>, B3311<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NeaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RpsQ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Cellular Component'''
* GO:0022626 cytosolic ribosome ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0022627 cytosolic small ribosomal subunit ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006412 translation ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0046677 response to antibiotic ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0003735 structural constituent of ribosome ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0019843 rRNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0070181 SSU rRNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ|rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ|rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rpsQ&loc=MG1655:3446590..3446336,W3110:4191848..4192102,REL606:3376473..3376219,DH10B:3544335..3544081 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3544335&end=3544081&gene=rpsQ&aa=mtdkirtlqgrvvsdkmeksivvaierfvkhpiygkfikrttklhvhdennecgigdvveirecrplsktkswtlvrvvekavl Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rpsQ+AND+escherichia+coli Pubmed(rpsQ)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rpsQ Textpresso(rpsQ)]


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Revision as of 23:34, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rpsQ

Gene Synonym(s)

ECK3298, b3311, JW3273, neaA, nea[1]

Product Desc.

30S ribosomal subunit protein S17[2][3];

Component of 30S ribosomal subunit[2][3]; ribosome[2][3]

30S ribosomal subunit protein S17[4]

Product Synonyms(s)

30S ribosomal subunit protein S17[1], B3311[2][1], NeaA[2][1], RpsQ[2][1]

Function from GO

Cellular Component

Biological Process

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rpsQ)    Textpresso(rpsQ)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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rpsQ can be deleted, but null mutants grow slowly and express kanamycin resistance weakly (Bubunenko, 2007), which may explain why a deletion was not isolated by Baba (2006), leading to its misclassification as an essential gene.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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