rne:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rne''  
''rne''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1069, b1084, JW1071, ams, hmp1, rne_1, smbB''<ref name='LIB:Riley_2006'/>
''ECK1069, b1084, JW1071, ams, hmp1, rne_1, smbB''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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Rne<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
Rne<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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RNase E; component of RNA degradosome; mRNA turnover; 5S and 16S RNA maturation<ref name='LIB:EcoGene'/>
RNase E; component of RNA degradosome; mRNA turnover; 5S and 16S RNA maturation<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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fused ribonucleaseE: endoribonuclease<ref name='LIB:Riley_2006'/>, RNA-binding protein<ref name='LIB:Riley_2006'/>, RNA degradosome binding protein<ref name='LIB:Riley_2006'/>, B1084<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SmbB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ams<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rne<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RNase E<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
fused ribonucleaseE: endoribonuclease<ref name='LIB:Riley_2006'/>, RNA-binding protein<ref name='LIB:Riley_2006'/>, RNA degradosome binding protein<ref name='LIB:Riley_2006'/>, B1084<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SmbB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ams<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rne<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RNase E<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0042802 identical protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rne|rne]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rne|rne]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=rne&loc=MG1655:1143590..1140405,W3110:1145944..1142759,DH10B:1199035..1195850,REL606:1158936..1155751 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1158936&end=1155751&gene=rne&aa=mkrmlinatqqeelrvalvdgqrlydldiespgheqkkaniykgkitriepsleaafvdygaerhgflplkeiareyfpanysahgrpnikdvlregqevivqidkeergnkgaalttfislagsylvlmpnnpraggisrriegddrtelkealaslelpegmglivrtagvgksaealqwdlsfrlkhweaikkaaesrpapflihqesnvivrafrdylrqdigeilidnpkvlelarqhiaalgrpdfsskiklytgeiplfshyqiesqiesafqrevrlpsggsividstealtaidinsaratrggdieetafntnleaadeiarqlrlrdlgglividfidmtpvrhqravenrlreavrqdrariqishisrfgllemsrqrlspslgesshhvcprcsgtgtvrdneslslsilrlieeealkentqevhaivpvpiasyllnekrsavnaietrqdgvrcvivpndqmetphyhvlrvrkgeetptlsymlpklheeamalpseeefaerkrpeqpalatfampdvppaptpaepaapvvapapkaapatpaapaqpgllsrffgalkalfsggeetkpteqpapkaeakperqqdrrkprqnnrrdrnerrdtrsertegsdnreenrrnrrqaqqqtaetresrqqaevtekartadeqqaprrersrrrnddkrqaqqeakalnveeqsvqeteqeervrpvqprrkqrqlnqkvryeqsvaeeavvapvveetvaaepivqeapaprtelvkvplpvvaqtapeqqeennadnrdnggmprrsrrsprhlrvsgqrrrryrderyptqspmpltvacaspelasgkvwirypivrpqdvqveeqreqeevhvqpmvtevpvaaaiepvvsapvveevagvveapvqvaepqpevvetthpeviaaavteqpqvitesdvavaqevaeqaepvvepqeetadieevvetaevvvaepevvaqpaapvvaevaaevetvaavepevtvehnhatapmtrapapeyvpeaprhsdwqrptfafegkgaagghtathhasaaparpqpve Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rne+AND+escherichia+coli Pubmed(rne)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=rne Textpresso(rne)]


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Revision as of 23:10, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rne

Gene Synonym(s)

ECK1069, b1084, JW1071, ams, hmp1, rne_1, smbB[1]

Product Desc.

Rne[2][3];

Component of ribonuclease E[3]; degradosome[3]

RNase E; component of RNA degradosome; mRNA turnover; 5S and 16S RNA maturation[4]

Product Synonyms(s)

fused ribonucleaseE: endoribonuclease[1], RNA-binding protein[1], RNA degradosome binding protein[1], B1084[2][1], SmbB[2][1], Ams[2][1], Rne[2][1], RNase E[2][1]

Function from GO

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rne[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(rne)    Textpresso(rne)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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The degradosome is organized with a helical cytoskeletal localization (Taghbalout, 2007).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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