Phage lambda FII:Gene Product(s): Difference between revisions

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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
||
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Fii
Fii
|-
|-
!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
||
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Fii, lambdap10
Fii, lambdap10
|-
|-
!align=left |Product description
!align=left {{table heading style}} |Product description
||
||
head-tail joining protein
head-tail joining protein
|-
|-
!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
||
||


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{|  id="L4a2ff2ceca172"  class=" tableEdit GO_table_product dataTable"   
{|  id="L4a2ff2ceca172"  class=" tableEdit GO_table_product dataTable"   
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
 
|
GO:0019030
|
icosahedral viral capsid
|
PMID:4588758
|
IMP: Inferred from Mutant Phenotype
|
 
|
C
|
 
|
complete


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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Name
||
 
|-
!align=left {{table heading style}} |Sequence
||
||
<pre>MADFDNLFDA AIARADETIR GYMGTSATIT SGEQSGAVIR GVFDDPENIS YAGQGVRVEG
<pre>MADFDNLFDA AIARADETIR GYMGTSATIT SGEQSGAVIR GVFDDPENIS YAGQGVRVEG
SSPSLFVRTD EVRQLRRGDT LTIGEENFWV DRVSPDDGGS CHLWLGRGVP PAVNRRR</pre>
SSPSLFVRTD EVRQLRRGDT LTIGEENFWV DRVSPDDGGS CHLWLGRGVP PAVNRRR</pre>
|-
|-
!align=left |Length
!align=left {{table heading style}} |Length
||
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117
117
|-
|-
!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
||
||
12.76 kDa
12.76 kDa
|-
|-
!align=left |pI
!align=left {{table heading style}} |pI
||
||
4.6 (calculated)
4.6 (calculated)
|-
|-
!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
||
||
13,980 - 14,105 (calc based on 2 Y, 2 W, and 1 C residues)
13,980 - 14,105 (calc based on 2 Y, 2 W, and 1 C residues)
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!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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!align=left |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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==== Structure figures ====
==== Structure figures ====
 
{{File:2KX4.pdb}}




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===Notes===
===Notes===
 
See ''Phages have adapted the same protein fold to fulfill multiple functions in virion assembly''<ref name='PMID:20660769'/>


==Gene Product Resources==
==Gene Product Resources==
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[[GenBank]]
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[http://www.ncbi.nlm.nih.gov/protein/9626253 GenBank:NP_040589.1]
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Latest revision as of 20:52, 9 August 2012

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Fii

Synonyms

Fii, lambdap10

Product description

head-tail joining protein

EC number (for enzymes)


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Notes

Function

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Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0019030

icosahedral viral capsid

PMID:4588758[1]

IMP: Inferred from Mutant Phenotype

C

complete

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Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MADFDNLFDA AIARADETIR GYMGTSATIT SGEQSGAVIR GVFDDPENIS YAGQGVRVEG
SSPSLFVRTD EVRQLRRGDT LTIGEENFWV DRVSPDDGGS CHLWLGRGVP PAVNRRR
Length

117

Mol. Wt

12.76 kDa

pI

4.6 (calculated)

Extinction coefficient

13,980 - 14,105 (calc based on 2 Y, 2 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_FII taxon=10710 </beststructure>

Models

View models at:

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</protect>

Structure figures

See Help:Jmol in EcoliWiki

Tail attachment protein FII, biological unit, PDB 2KX4
<jmol> <jmolApplet> <color>white</color> <uploadedFileContents >2KX4.pdb</uploadedFileContents> <name></name> <script> wireframe off; spacefill off; trace off; rotate ON; cartoon; color chain; </script> </jmolApplet> </jmol>
<jmol> <jmolCheckbox > <scriptWhenChecked > rotate on; </scriptWhenChecked > <scriptWhenUnchecked > rotate off; </scriptWhenUnchecked > <checked>true</checked> <text>rotate</text> </jmolCheckbox > <jmolButton><script>reset; </script><text>reset</text></jmolButton> </jmol>









Notes

See Phages have adapted the same protein fold to fulfill multiple functions in virion assembly[2]

Gene Product Resources


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links



References


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Boklage, CE et al. (1973) The lambda F mutants belong to two cistrons. Genetics 75 221-30 PubMed
  2. ↑ Cardarelli, L et al. (2010) Phages have adapted the same protein fold to fulfill multiple functions in virion assembly. Proc. Natl. Acad. Sci. U.S.A. 107 14384-9 PubMed

Categories


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