Cis Element:Phage lambda cos: Difference between revisions

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==Cis element summary table==
==Cis element summary table==
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|-
!align=left {{table_heading_style}} |Standard Name
||
''lambda cos''
|-
!align=left {{table_heading_style}} |Synonyms
||
cohesive end site
|-
!align=left {{table_heading_style}} |Function
||
Recognition and cleavage site for Lambda terminase
|-
!align=left {{table_heading_style}} |Location
||
''cos'' site includes roughly nt 48462-48502 through nt 1 - 132 (PMID:419690, PMID:419695, PMID:666898)
 
''cos'' junction is located at nt 1-12
|-
!align=left {{table_heading_style}} |SO terms
||
 
 
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===Notes===
===Notes===


== Location and Sequence ==
== Location and Sequence ==
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<newTableEdit>Template:Gene_location_table</newTableEdit>
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|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
Phage lambda (NC_001416)
|
 
|
NC_001416: 1..132<br />{{GBrowseFigureByCoord|1|142|bacteriophage_lambda|NC_001416}}
|
{{GBrowseLink|bacteriophage_lambda|NC_001416|1|132|Gbrowse (Bacteriophage lambda)}}
|
{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|1|132|FASTA Dump}}
 
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===Notes===
===Notes===
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== Interactions==
== Interactions==
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{{BacktoTop}}
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!|Partner Type!!Partner!!Notes!!References!!Evidence
 
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===Notes===
===Notes===
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== Mutant alleles and phenotypes ==
== Mutant alleles and phenotypes ==
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!|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
 
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===Notes===
===Notes===
Ber et al. 1984. <ref name='PMID:6238175'/> identified an IHF site required for packaging.


== Genetic Resources ==
== Genetic Resources ==
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{{BacktoTop}}
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!|Resource!!Resource Type!!Source!!Notes/Reference
 
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===Notes===
===Notes===


== Accessions ==
== Accessions ==
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{{BacktoTop}}
<newTableEdit>Template:Gene accessions table</newTableEdit>
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!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
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EcoCyc:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
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EcoGene:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
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RegulonDB:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
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EchoBASE:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />


===Categories===
===Categories===
[[Category:Phage lambda:Cis_Element]]

Latest revision as of 08:40, 27 May 2013

Cis element summary table

Standard Name

lambda cos

Synonyms

cohesive end site

Function

Recognition and cleavage site for Lambda terminase

Location

cos site includes roughly nt 48462-48502 through nt 1 - 132 (PMID:419690[1], PMID:419695[2], PMID:666898[3])

cos junction is located at nt 1-12

SO terms


edit table

Notes

Location and Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

Phage lambda (NC_001416)

NC_001416: 1..132
gbrowse_img.php?coord=1..142&genome=bacteriophage_lambda&name=NC_001416&trackset=0&width=300&.png

edit table


Notes

Interactions

[back to top]


See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table


Notes

Mutant alleles and phenotypes

[back to top]


Allele Nt change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table


Notes

Ber et al. 1984. [4] identified an IHF site required for packaging.

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
edit table

Notes

Accessions

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Feiss, M & Siegele, DA (1979) Packaging of the bacteriophage lambda chromosome: dependence of cos cleavage on chromosome length. Virology 92 190-200 PubMed
  2. ↑ Feiss, M et al. (1979) Packaging of the bacteriophage lambda chromosome: a role for base sequences outside cos. Virology 92 56-67 PubMed
  3. ↑ Nichols, BP & Donelson, JE (1978) 178-Nucleotide sequence surrounding the cos site of bacteriophage lambda DNA. J. Virol. 26 429-34 PubMed
  4. ↑ Bear, SE et al. (1984) An accessory role for Escherichia coli integration host factor: characterization of a lambda mutant dependent upon integration host factor for DNA packaging. J. Virol. 52 966-72 PubMed

Categories

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