Phage lambda FII:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
created page for a new gene.
 
Table edited by Bmcintosh via TableEdit
 
(21 intermediate revisions by 4 users not shown)
Line 28: Line 28:
|}
|}
==Nomenclature==
==Nomenclature==
{{{NOMENCLATURE_TABLE}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2cec8ef4-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_nomenclature_help}}
{|  id="B4a2ff2cec8ef4"  class=" tableEdit Product_nomenclature_table" 
 
|-
!align=left {{table heading style}} |Standard name
||
Fii
|-
!align=left {{table heading style}} |Synonyms
||
Fii, lambdap10
|-
!align=left {{table heading style}} |Product description
||
head-tail joining protein
|-
!align=left {{table heading style}} |EC number (for enzymes)
||
 
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2cec8ef4&page=164749&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2cec8ef4--></protect>
<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
===Notes===
===Notes===
{{{NOMENCLATURE_NOTES}}}
 


==Function==
==Function==
Line 37: Line 66:
<protect>
<protect>
<big>'''Gene Ontology'''</big>
<big>'''Gene Ontology'''</big>
{{{GO_TABLE}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164749.L4a2ff2ceca172-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_GO_help}}
{|  id="L4a2ff2ceca172"  class=" tableEdit GO_table_product dataTable" 
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
 
|
GO:0019030
|
icosahedral viral capsid
|
PMID:4588758
|
IMP: Inferred from Mutant Phenotype
|
 
|
C
|
 
|
complete
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.L4a2ff2ceca172&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_product edit table]</span> || || || || || || || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.L4a2ff2ceca172--></protect>


<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions'''</big>
{{{INTERACTIONS_TABLE}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164749.X4a2ff2cecb799-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_interactions_help}}
{|  id="X4a2ff2cecb799"  class=" tableEdit Product_interactions_table dataTable" 
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.X4a2ff2cecb799&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table]</span> || || || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.X4a2ff2cecb799--></protect>
<!--Function_notes--></protect>
<!--Function_notes--></protect>
===Notes===
===Notes===
{{{FUNCTION_NOTES}}}
 


==Localization==
==Localization==
{{{LOCALIZATION_TABLE}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2ceccaae-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_localization_help}}
{|  id="B4a2ff2ceccaae"  class=" tableEdit Product_localization_table" 
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2ceccaae&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_localization_table edit table]</span> || || || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2ceccaae--></protect>
<protect><!--Localization_notes--></protect>
<protect><!--Localization_notes--></protect>


===Notes===
===Notes===
{{{LOCALIZATION_NOTES}}}
 


==Structure and Physical Properties==
==Structure and Physical Properties==
Line 56: Line 146:
<protect>
<protect>
<span id="Sequence"></span><big>'''Physical Properties'''</big>
<span id="Sequence"></span><big>'''Physical Properties'''</big>
{{{PHYSICAL_PROPERTIES_TABLE}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164749.T4a2ff2cecdbc4-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_physical_properties_help}}
{|  id="T4a2ff2cecdbc4"  class=" tableEdit Product_phys_prop_table" 
 
|-
!align=left {{table heading style}} |Name
||
 
|-
!align=left {{table heading style}} |Sequence
||
<pre>MADFDNLFDA AIARADETIR GYMGTSATIT SGEQSGAVIR GVFDDPENIS YAGQGVRVEG
SSPSLFVRTD EVRQLRRGDT LTIGEENFWV DRVSPDDGGS CHLWLGRGVP PAVNRRR</pre>
|-
!align=left {{table heading style}} |Length
||
117
|-
!align=left {{table heading style}} |Mol. Wt
||
12.76 kDa
|-
!align=left {{table heading style}} |pI
||
4.6 (calculated)
|-
!align=left {{table heading style}} |Extinction coefficient
||
13,980 - 14,105 (calc based on 2 Y, 2 W, and 1 C residues)
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.T4a2ff2cecdbc4&page=164749&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.T4a2ff2cecdbc4--></protect>


<span id="Domains"><big>'''Domains/Motifs/Modification Sites'''</big></span>
<span id="Domains"><big>'''Domains/Motifs/Modification Sites'''</big></span>
Line 62: Line 190:
<tr align="left" valign="top">
<tr align="left" valign="top">
<td>
<td>
{{{DOMAINS_TABLE}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164749.E4a2ff2cecf0aa-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="E4a2ff2cecf0aa"  class=" tableEdit Product_motif_table dataTable" 
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes!!References
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.E4a2ff2cecf0aa&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_motif_table edit table]</span> || || || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.E4a2ff2cecf0aa--></protect>
</td>
</td>
<td>
<td>
Line 71: Line 213:
</table>
</table>


<span id="Structure"></span><big>'''Structure'''</big>
<table><tr valign='top'><td>
{{{STRUCTURE_TABLE}}}
<span id='Structure'></span><big>'''Structure'''</big><br />
<!--Structure_notes--></protect>
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164749.D4a2ff2ced0395-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_structure_help}}
{|  id="D4a2ff2ced0395"  class=" tableEdit Product_structure_table" 
 
|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=Phage_lambda_FII
taxon=10710
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.D4a2ff2ced0395&page=164749&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.D4a2ff2ced0395--></protect>
</td><td></protect>
==== Structure figures ====
{{File:2KX4.pdb}}
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****        -->
</td><tr><table><!--Structure_notes--></protect>
 
===Notes===
===Notes===
{{{STRUCTURE_NOTES}}}
See ''Phages have adapted the same protein fold to fulfill multiple functions in virion assembly''<ref name='PMID:20660769'/>


==Gene Product Resources==
==Gene Product Resources==
{{BacktoTop}}
{{BacktoTop}}
{{{PRODUCT_RESOURCES_TABLE}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164749.V4a2ff2ced1547-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_resources_help}}
{|  id="V4a2ff2ced1547"  class=" tableEdit Product_resource_table" 
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.V4a2ff2ced1547&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_resource_table edit table]</span> || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.V4a2ff2ced1547--></protect>
<protect><!--Resources_notes--></protect>
<protect><!--Resources_notes--></protect>
===Notes===
===Notes===
{{{PRODUCT_RESOURCES_NOTES}}}
 


==Accessions in Other Databases==
==Accessions in Other Databases==
{{BacktoTop}}
{{BacktoTop}}
{{{ACCESSIONS_TABLE}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164749.O4a2ff2ced27ec-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="O4a2ff2ced27ec"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
!|Database!!Accession!!Notes
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.O4a2ff2ced27ec&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.O4a2ff2ced27ec--></protect>
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
{{{ACCESSIONS_NOTES}}}
 


==Links==
==Links==
{{BacktoTop}}
{{BacktoTop}}
{{{LINKS}}}
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.164749.K4a2ff2ced3aa9-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|  id="K4a2ff2ced3aa9"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
!|Name!!URL!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.K4a2ff2ced3aa9&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.K4a2ff2ced3aa9--></protect>




Line 99: Line 332:
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
 
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
{{{CATEGORIES}}}
 


[[Category:Proteins]]
[[Category:Proteins]]

Latest revision as of 20:52, 9 August 2012

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Fii

Synonyms

Fii, lambdap10

Product description

head-tail joining protein

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0019030

icosahedral viral capsid

PMID:4588758[1]

IMP: Inferred from Mutant Phenotype

C

complete

edit table


Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MADFDNLFDA AIARADETIR GYMGTSATIT SGEQSGAVIR GVFDDPENIS YAGQGVRVEG
SSPSLFVRTD EVRQLRRGDT LTIGEENFWV DRVSPDDGGS CHLWLGRGVP PAVNRRR
Length

117

Mol. Wt

12.76 kDa

pI

4.6 (calculated)

Extinction coefficient

13,980 - 14,105 (calc based on 2 Y, 2 W, and 1 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
edit table

<motif_map/>

Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_FII taxon=10710 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

See Help:Jmol in EcoliWiki

Tail attachment protein FII, biological unit, PDB 2KX4
<jmol> <jmolApplet> <color>white</color> <uploadedFileContents >2KX4.pdb</uploadedFileContents> <name></name> <script> wireframe off; spacefill off; trace off; rotate ON; cartoon; color chain; </script> </jmolApplet> </jmol>
<jmol> <jmolCheckbox > <scriptWhenChecked > rotate on; </scriptWhenChecked > <scriptWhenUnchecked > rotate off; </scriptWhenUnchecked > <checked>true</checked> <text>rotate</text> </jmolCheckbox > <jmolButton><script>reset; </script><text>reset</text></jmolButton> </jmol>









Notes

See Phages have adapted the same protein fold to fulfill multiple functions in virion assembly[2]

Gene Product Resources


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table


Notes

Links



References


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Boklage, CE et al. (1973) The lambda F mutants belong to two cistrons. Genetics 75 221-30 PubMed
  2. ↑ Cardarelli, L et al. (2010) Phages have adapted the same protein fold to fulfill multiple functions in virion assembly. Proc. Natl. Acad. Sci. U.S.A. 107 14384-9 PubMed

Categories


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Phage_lambda_FII:Gene_Product(s)&oldid=1373383"