rne:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rne:Gene|''rne]]'' (synonyms: ''ECK1069, b1084, JW1071, ams, hmp1, rne_1, smbB'')<ref name='LIB:Riley_2006'/>
''rne''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rne:Gene_Product(s)|Rne product]]<ref name='LIB:Riley_2006'/>: fused ribonucleaseE: endoribonuclease product, RNA-binding protein product, RNA degradosome binding protein product, B1084 product, SmbB product, Ams product, RNase E product
''ECK1069, b1084, JW1071, ams, hmp1, rne_1, smbB''<ref name='LIB:Riley_2006'/>, smbB''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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Rne<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
Rne<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:ribonuclease E|ribonuclease E]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:degradosome|degradosome]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:ribonuclease E|ribonuclease E]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:degradosome|degradosome]]<ref name='LIB:EcoCyc11.1'/>


RNase E; component of RNA degradosome; mRNA turnover; 5S and 16S RNA maturation<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''fused ribonucleaseE: endoribonuclease<ref name='LIB:Riley_2006'/>, RNA-binding protein<ref name='LIB:Riley_2006'/>, RNA degradosome binding protein<ref name='LIB:Riley_2006'/>, B1084<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SmbB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ams<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rne<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RNase E<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ams, ECK1069, hmp1, JW1071, smbB, b1084''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rne|rne]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rne|rne]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rne&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10859]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000850&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rne&loc=MG1655%3A1143590..1140405,W3110%3A1145944..1142759,DH10B%3A1199035..1195850,REL606%3A1158936..1155751,BW2952%3A1044330..1047515]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1044330&end=1047515&gene=rne&aa=mkrmlinatqqeelrvalvdgqrlydldiespgheqkkaniykgkitriepsleaafvdygaerhgflplkeiareyfpanysahgrpnikdvlregqevivqidkeergnkgaalttfislagsylvlmpnnpraggisrriegddrtelkealaslelpegmglivrtagvgksaealqwdlsfrlkhweaikkaaesrpapflihqesnvivrafrdylrqdigeilidnpkvlelarqhiaalgrpdfsskiklytgeiplfshyqiesqiesafqrevrlpsggsividstealtaidinsaratrggdieetafntnleaadeiarqlrlrdlgglividfidmtpvrhqravenrlreavrqdrariqishisrfgllemsrqrlspslgesshhvcprcsgtgtvrdneslslsilrlieeealkentqevhaivpvpiasyllnekrsavnaietrqdgvrcvivpndqmetphyhvlrvrkgeetptlsymlpklheeamalpseeefaerkrpeqpalatfampdvppaptpaepaapvvapapkaapatpaapaqpgllsrffgalkalfsggeetkpteqpapkaeakperqqdrrkprqnnrrdrnerrdtrsertegsdnreenrrnrrqaqqqtaetresrqqaevtekartadeqqaprrersrrrnddkrqaqqeakalnveeqsvqeteqeervrpvqprrkqrqlnqkvryeqsvaeeavvapvveetvaaepivqeapaprtelvkvplpvvaqtapeqqeennadnrdnggmprrsrrsprhlrvsgqrrrryrderyptqspmpltvacaspelasgkvwirypivrpqdvqveeqreqeevhvqpmvtevpvaaaiepvvsapvveevagvveapvqvaepqpevvetthpeviaaavteqpqvitesdvavaqevaeqaepvvepqeetadieevvetaevvvaepevvaqpaapvvaevaaevetvaavepevtvehnhatapmtrapapeyvpeaprhsdwqrptfafegkgaagghtathhasaaparpqpve]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rne+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rne]]&nbsp;&nbsp;


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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rne

Gene Synonym(s)

ECK1069, b1084, JW1071, ams, hmp1, rne_1, smbB[1], smbB

Product Desc.

Rne[2][3];

Component of ribonuclease E[3]; degradosome[3]

RNase E; component of RNA degradosome; mRNA turnover; 5S and 16S RNA maturation[4]

Product Synonyms(s)

fused ribonucleaseE: endoribonuclease[1], RNA-binding protein[1], RNA degradosome binding protein[1], B1084[2][1], SmbB[2][1], Ams[2][1], Rne[2][1], RNase E[2][1] , ams, ECK1069, hmp1, JW1071, smbB, b1084

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rne[2]

Regulation/Activity
Quick Links



        

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Notes

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The degradosome is organized with a helical cytoskeletal localization (Taghbalout, 2007).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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