xerC:Evolution: Difference between revisions

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From ECOO157CYC  


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<protect><!--Homology_notes--></protect>
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===Notes===
===Notes===
 
Neilson ''et al.'' (1999) describes site-specific recombination at ''dif'' by ''H. influenzae'' XerC<ref name='PMID:10048034'/>.  They conclude the ''Hin''XerC and ''Hin''XerD can interact with their ''E.coli'' counterparts.


==Families==
==Families==
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02899 PF02899  Phage integrase, N-terminal SAM-like domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02899 PFAM:PF02899]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00589 PF00589  Phage integrase family]
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[[EcoCyc]]
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EcoCyc:EG11069
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11069
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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RegulonDB:ECK120001058
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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EchoBASE:EB1062
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012448
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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===Notes===
===Notes===
 
Member of the lambda integrase family of site-specific recombinases<ref name='PMID:2254268'/>.


==Links==
==Links==
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
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__NOTOC__
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===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:37, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000026953 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025093 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

XERC

From SHIGELLACYC

E. coli O157

XERC

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Neilson et al. (1999) describes site-specific recombination at dif by H. influenzae XerC[1]. They conclude the HinXerC and HinXerD can interact with their E.coli counterparts.

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02899 Phage integrase, N-terminal SAM-like domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47823

Superfamily (EcoliWiki Page)

SUPERFAMILY:56349

Pfam (EcoliWiki Page)

PF00589 Phage integrase family

EcoCyc

EcoCyc:EG11069

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11069

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001058

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1062

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012448

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Member of the lambda integrase family of site-specific recombinases[2].

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Neilson, L et al. (1999) Site-specific recombination at dif by Haemophilus influenzae XerC. Mol. Microbiol. 31 915-26 PubMed
  2. ↑ Colloms, SD et al. (1990) Recombination at ColE1 cer requires the Escherichia coli xerC gene product, a member of the lambda integrase family of site-specific recombinases. J. Bacteriol. 172 6973-80 PubMed

Categories

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