Sequenced E. coli Genomes: Difference between revisions

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EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains.  Although the pathogenic strains of ''E. coli''  are not the focus of EcoliWiki, numerous strains of ''E. coli'', non-pathogenic or pathogenic, have been sequenced or the projects are in progress.  Use this table to track which genomes are available and where they are available from.  Please add any strains you know are being sequenced or are finished.
[[:Category:E._coli_genomes|Go to the ''E. coli'' Gene Lists in EcoliWiki]]
 
EcoliWiki plans to create gene lists for all available laboratory ''E. coli'' K-12, B, and C strains.  Although pathogenic strains of ''E. coli''  are not the focus of EcoliWiki, numerous strains of ''E. coli'', non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so.  Use this table to track which genomes are available and from where.  Please add or edit any strains you know are being sequenced or are finished.


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{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="P4919ed888b288" class=" tableEdit Sequenced_strains"   
|- {{TableHeadingColor}}
|- {{TableHeadingColor}}
!|Strain!!Sequencing status!!Accessions (if applicable)!!In EcoliWiki!!Comments
!|Strain!!Sequencing status!!Accessions (if applicable)!!In EcoliWiki!!Comments!!Taxon ID
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Line 21: Line 23:
yes
yes
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[[PMID:9278503]]<ref name=PMID:9278503/>
PMID:9278503
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[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=511145 511145]
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Line 32: Line 36:
yes
yes
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[[PMID:16738553]]<ref name=PMID:16738553/>
PMID:16738553
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[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=316407 316407]
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_010473 NC_010473]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_010473 NC_010473]
|
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not yet
yes
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[[PMID:18245285]]<ref name=PMID:18245285/>
PMID:18245285


This genome will be loaded as soon as possible -
This genome has now been incorporated into EcoliWiki.
Nov 11, 2008
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[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=316385 316385]
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''Escherichia coli'' (B) REL606
[[REL606]]
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|
in progress
complete
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|
 
[http://www.ncbi.nlm.nih.gov/nuccore/NC_012967 NC_012967]
|
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not yet
yes
|
|
Will be included in EcoliWiki when made publically available. <br/>
Information about the genes of this E. coli B strain is now available from EcoliWiki
[http://www.gem.re.kr/ International E. coli B Consortium]<br/>
[http://www.gem.re.kr/ International E. coli B Consortium]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18281 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18281 Entrez Genome Project] <br/>
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=413997 413997]
|-  
|-  
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''E. coli'' BL21 (DE3)
[[BL21(DE3)|''E. coli'' BL21 (DE3)]]
|
|
in progress
complete
|
|
 
[http://www.ncbi.nlm.nih.gov/nuccore/CP001509.3 CP001509.3] & [http://www.ncbi.nlm.nih.gov/nuccore/NC_012947.1 NC_012947.1] & [http://www.ncbi.nlm.nih.gov/nuccore/CP001665.1 CP001665.1]
|
|
not yet
not yet
|
|
Will be included in EcoliWiki when publically available. <br/>
We are working on adding this strain to EcoliWiki. <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 DOE Joint Genome Institute]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 DOE Joint Genome Institute]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 Entrez Genome Project] <br/>  
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30681 Entrez Genome Project] <br/>
|-
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''E. coli'' BL21(DE3)
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in progress
|
 
|
not yet
|
|
Will be included in EcoliWiki when publically available. <br/>
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=469008 469008]  
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20713 Korea Research Institute of Bioscience and Biotechnology]  <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20713 Entrez Genome Project]  
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Line 97: Line 95:
no
no
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_101_1/index.shtml E. coli 101-1 from JCVI]  
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_101_1/index.shtml JCVI]  
<br/>
<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16193 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16193 Entrez Genome Project] <br/>


Enteroaggregative.
Enteroaggregative.
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=358709&lvl=3&lin=f&keep=1&srchmode=1&unlock 358709]
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Line 114: Line 113:
no
no
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_53638/index.shtml 53638 at JCVI]<br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_53638/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15639 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15639 Entrez Genome Project]<br/>
Enteroinvasive.
Enteroinvasive.
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=344610&lvl=3&lin=f&keep=1&srchmode=1&unlock 344610]
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Line 128: Line 130:
no
no
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b171/index.shtml B171 at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b171/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15630 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15630 Entrez Genome Project]<br/>
Enteropathogenic.  
Enteropathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=344601&lvl=3&lin=f&keep=1&srchmode=1&unlock 344601]
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Line 141: Line 146:
no
no
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b7a/index.shtml B7A at JCVI]<br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_b7a/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15572 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15572 Entrez Genome Project] <br/>
Enterotoxigenic.  
Enterotoxigenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340184&lvl=3&lin=f&keep=1&srchmode=1&unlock 340184]
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Line 154: Line 162:
no
no
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e110019/index.shtml E110019 at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e110019/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15578 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15578 Entrez Genome Project]<br/>


Atypical enteropathogenic.  
Atypical enteropathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340186&lvl=3&lin=f&keep=1&srchmode=1&unlock 340186]
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Line 168: Line 179:
no
no
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e22/index.shtml E22 at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e22/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15577 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15577 Entrez Genome Project]<br/>
Enteropathogenic.  
Enteropathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340185&lvl=3&lin=f&keep=1&srchmode=1&unlock 340185]
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Line 181: Line 195:
no
no
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[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e24377a/index.shtml E24377A at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_e24377a/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13960 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13960 Entrez Genome Project]<br/>
Enterotoxigenic.  
Enterotoxigenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=331111 331111]
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Line 190: Line 207:
in progress
in progress
|
|
{http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_AAJU00000000 Whole Genome Shotgun Sequence F11]
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NZ_AAJU00000000 Whole Genome Shotgun Sequence F11]
|
|
no
no
|
|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_f11/index.shtml F11 at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_f11/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15576 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=15576 Entrez Genome Project]<br/>
Extra-intestinal pathogenic.  
Extra-intestinal pathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=340197&lvl=3&lin=f&keep=1&srchmode=1&unlock 340197]
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Line 207: Line 227:
no
no
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|
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_hs/index.shtml HS at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_hs/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13959 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=13959 Entrez Genome Project]<br/>
Human commensal isolate.  
Human commensal isolate.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=331112&lvl=3&lin=f&keep=1&srchmode=1&unlock 331112]
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Line 220: Line 243:
no
no
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|
[[PMID:18708504]]<ref name=PMID:18708504/>
PMID:18708504
<br/>
<br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_secec_sms_3_5/index.shtml SECEC SMS-3-5 at JCVI] <br/>
[http://msc.jcvi.org/e_coli_and_shigella/escherichia_coli_secec_sms_3_5/index.shtml SECEC SMS-3-5 at JCVI] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=19469 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=19469 Entrez Genome Project] <br/>
Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.  
Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=439855 439855]
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Line 235: Line 260:
no
no
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[http://msc.jcvi.org/o157h7/ec4024/index.shtml EC4024 at JCVI]  <br/>
[http://msc.jcvi.org/o157h7/ec4024/index.shtml JCVI]  <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27747 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27747 Entrez Genome Project] <br/>
Enterohemorrhagic.  
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444454&lvl=3&lin=f&keep=1&srchmode=1&unlock 444454]
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Line 248: Line 276:
no
no
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[http://msc.jcvi.org/o157h7/ec4042/index.shtml EC4042 at JCVI] <br/>
[http://msc.jcvi.org/o157h7/ec4042/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27737 Entrez Genome Project] <br/>  
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27737 Entrez Genome Project] <br/>  
Enterohemorrhagic.
Enterohemorrhagic.


 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444449&lvl=3&lin=f&keep=1&srchmode=1&unlock 444449]
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Line 263: Line 294:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4045/index.shtml EC4045 at JCVI] <br/>
[http://msc.jcvi.org/o157h7/ec4045/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27733 Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27733 Entrez Genome Project] <br/>
Enterohemorrhagic.
Enterohemorrhagic.
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444448&lvl=3&lin=f&keep=1&srchmode=1&unlock 444448]
|-  
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Line 277: Line 311:
no
no
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|
[http://msc.jcvi.org/o157h7/ec4076/index.shtml EC4076 at JCVI] <br/>
[http://msc.jcvi.org/o157h7/ec4076/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27745 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27745 Entrez Genome Project]<br/>
Enterohemorrhagic.
Enterohemorrhagic.
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444453&lvl=3&lin=f&keep=1&srchmode=1&unlock 444453]
|-  
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Line 291: Line 328:
no
no
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|
[http://msc.jcvi.org/o157h7/ec4113/index.shtml EC4113 at JCVI]<br/>
[http://msc.jcvi.org/o157h7/ec4113/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27743 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27743 Entrez Genome Project]<br/>
Enterohemorrhagic.
Enterohemorrhagic.
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444452&lvl=3&lin=f&keep=1&srchmode=1&unlock 444452]
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Line 305: Line 345:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4115/index.shtml EC4115 at JCVI]<br/>
[http://msc.jcvi.org/o157h7/ec4115/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27739 Entrez Genome Project]
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27739 Entrez Genome Project]
<br/>Enterohemorrhagic.  
<br/>Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=444450 444450]
|-  
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Line 318: Line 361:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4196/index.shtml EC4196 at JCVI ]<br/>
[http://msc.jcvi.org/o157h7/ec4196/index.shtml JCVI ]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27741 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27741 Entrez Genome Project]<br/>
Enterohemorrhagic.
Enterohemorrhagic.
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444451&lvl=3&lin=f&keep=1&srchmode=1&unlock 444451]
|-  
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Line 332: Line 378:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4206/index.shtml EC4206 at JCVI]<br/>
[http://msc.jcvi.org/o157h7/ec4206/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27735 Entrez Genome Project]
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27735 Entrez Genome Project]
<br/> Enterohemorrhagic.  
<br/> Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=444447&lvl=3&lin=f&keep=1&srchmode=1&unlock 444447]
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Line 345: Line 394:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4401/index.shtml EC4401 at JCVI] <br/>
[http://msc.jcvi.org/o157h7/ec4401/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27749 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27749 Entrez Genome Project]<br/>
Enterohemorrhagic.
Enterohemorrhagic.  
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478004&lvl=3&lin=f&keep=1&srchmode=1&unlock 478004]
|-  
|-  
|
|
Line 358: Line 410:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4486/index.shtml EC4486 at JCVI]<br/>
[http://msc.jcvi.org/o157h7/ec4486/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27751 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27751 Entrez Genome Project]<br/>
Enterohemorrhagic.  
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478005&lvl=3&lin=f&keep=1&srchmode=1&unlock 478005]
|-  
|-  
|
|
Line 371: Line 426:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec4501/index.shtml EC4501 at JCVI] <br/>
[http://msc.jcvi.org/o157h7/ec4501/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27753 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27753 Entrez Genome Project]<br/>
Enterohemorrhagic.
Enterohemorrhagic.  
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478006&lvl=3&lin=f&keep=1&srchmode=1&unlock 478006]
|-  
|-  
|
|
Line 384: Line 442:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec508/index.shtml EC508 at JCVI]<br/>
[http://msc.jcvi.org/o157h7/ec508/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27755 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27755 Entrez Genome Project]<br/>
Enterohemorrhagic.  
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478007&lvl=3&lin=f&keep=1&srchmode=1&unlock 478007]
|-  
|-  
|
|
''E. coli'' O157:H7 TW14359
''E. coli'' O157:H7 TW14359
|
|
in progress
complete
|
|
 
[http://www.ncbi.nlm.nih.gov/nuccore/NC_013008 NC_013008]
|
|
no
no
|
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30045 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=30045 Entrez Genome Project]<br/>
Enterohemorrhagic.  
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=544404&lvl=3&lin=f&keep=1&srchmode=1&unlock 544404]
|-  
|-  
|
|
Line 409: Line 472:
no
no
|
|
[http://msc.jcvi.org/o157h7/ec869/index.shtml EC869 at JCVI]<br/>
[http://msc.jcvi.org/o157h7/ec869/index.shtml JCVI]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27757 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=27757 Entrez Genome Project]<br/>
Enterohemorrhagic.  
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=478008&lvl=3&lin=f&keep=1&srchmode=1&unlock 478008]
|-  
|-  
|
|
Line 424: Line 490:
[http://www.medicalbiofilm.org/genomes MBRI]<br/>
[http://www.medicalbiofilm.org/genomes MBRI]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=32275 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=32275 Entrez Genome Project]<br/>
Bovine isolate; does not express Shiga toxin.  
Bovine isolate; does not express Shiga toxin.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=570506&lvl=3&lin=f&keep=1&srchmode=1&unlock 570506]
|-  
|-  
|
|
Line 435: Line 503:
no
no
|
|
[http://msc.jcvi.org/o157h7/tw14588/index.shtml TW14588 at JCVI] <br/>
[http://msc.jcvi.org/o157h7/tw14588/index.shtml JCVI] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=28847 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=28847 Entrez Genome Project]<br/>
Enterohemorrhagic.  
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=502346&lvl=3&lin=f&keep=1&srchmode=1&unlock 502346]
|-  
|-  
|
|
Line 449: Line 520:
|
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=search&term=txid410290%5Borgn%5D Entrez Genome Project] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=search&term=txid410290%5Borgn%5D Entrez Genome Project] <br/>
Enterohemorrhagic bovine isolate.  
Enterohemorrhagic bovine isolate.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=410290&lvl=3&lin=f&keep=1&srchmode=1&unlock 410290]
|-  
|-  
|
|
Line 460: Line 533:
no
no
|
|
[[PMID:11258796]]<ref name=PMID:11258796/>
PMID:11258796
<br/>
This strain is also referred to as ''E. coli'' O157:H7 Sakai
<br/>
<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=226 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=226 Entrez Genome Project]<br/>
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83334&lvl=3&lin=f&keep=1&srchmode=1&unlock 83334]
|-  
|-  
|
|
Line 474: Line 551:
no
no
|
|
[[PMID:17293413]]<ref name=PMID:17293413/>
PMID:17293413
<br/>
<br/>
[http://ecoli.cvm.iastate.edu/display/NolanLab/APEC+O1+genome Nolan Lab Bacterial Pathogenesis Laboratory]<br/>
[http://ecoli.cvm.iastate.edu/display/NolanLab/APEC+O1+genome Nolan Lab Bacterial Pathogenesis Laboratory]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16718 Entrez Genome Project]<br/>  
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16718 Entrez Genome Project]<br/>
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=405955 405955]
|-  
|-  
|
|
Line 488: Line 568:
no
no
|
|
[[PMID:16585510]]<ref name=PMID:16585510/>
PMID:16585510
<br/>
<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16259 Entrez Genome Project]  
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16259 Entrez Genome Project]
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=364106 364106]  
|-  
|-  
|
|
''E. coli'' 042
''E. coli'' 042
|
|
in progress
complete
|
|
 
[http://www.ncbi.nlm.nih.gov/nuccore/FN554766 FN554766]
|
|
no
no
|
|
[http://www.sanger.ac.uk/Projects/Escherichia_Shigella/ Sanger Institute]
[http://www.sanger.ac.uk/Projects/Escherichia_Shigella/ Sanger Institute] <br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)]  
<br/>[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=340 Entrez Genome Project]<br/>
<br/>[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=340 Entrez Genome Project]<br/>
Enteroaggregative.  
Enteroaggregative.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=216592&lvl=3&lin=f&keep=1&srchmode=1&unlock 216592]
|-  
|-  
|
|
Line 514: Line 599:
no
no
|
|
[[PMID:16879640]]<ref name=PMID:16879640/>
PMID:16879640
<br/>
<br/>
[http://www.g2l.bio.uni-goettingen.de/projects/c_proj_ec.html University of Gottingen]
[http://www.g2l.bio.uni-goettingen.de/projects/c_proj_ec.html University of Gottingen]
<br/>
<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16235 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=16235 Entrez Genome Project]<br/>
Uropathogenic.  
Uropathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=362663 362663]
|-
|
''E. coli'' RS218
|
in progress
|
 
|
no
|
PMID:16988236
<br/>
[http://www.genome.wisc.edu/sequencing/rs218.htm University of Wisconsin Genome Center]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=19411 Entrez Genome Project]
<br/>
''E. coli'' K1; Neonatal meningitis ''E. coli'' (NMEC).
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=439184&lvl=3&lin=f&keep=1&srchmode=1&unlock 439184]
|-
|
''E. coli'' CFT073
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_004431 NC_004431]
|
no
|
PMID:12471157
<br/>
[http://www.genome.wisc.edu/sequencing/upec.htm University of Wisconsin Genome Center]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=313 Entrez Genome Project] <br/>
Uropathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=199310 199310]
|-  
|-  
|
|
''E. coli'' ATCC 8739
[[ATCC_8739|''E. coli'' ATCC 8739]]
|
|
complete
complete
Line 530: Line 654:
not yet
not yet
|
|
E. coli B strain <br/>
''E. coli'' Crooks strain (sometimes misnamed as ''E. coli'' B strain (see page for [http://ecoliwiki.net/colipedia/index.php/ATCC_8739 ATCC 8739])<br/>
[http://genome.ornl.gov/microbial/ecol_c/ Joint Genome Institute]<br/>
[http://genome.ornl.gov/microbial/ecol_c/ Joint Genome Institute]<br/>
[http://www.ericbrc.org/portal/eric/ecoli Enteropathogen Resource Integration Center (ERIC)] <br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18083 Entrez Genome Project]<br/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18083 Entrez Genome Project]<br/>


|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=481805 481805]
|-
|
''E. coli'' F18+
|
in progress
|
|
no
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=28061 Entrez Genome Project]<br/>
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=488477&lvl=3&lin=f&keep=1&srchmode=1&unlock 488477]
|-
|
''E. coli'' 789 A/C 1
|
in progress
|
|
no
|
[http://www.g2l.bio.uni-goettingen.de/projects/f_projects.html Gottingen Genomics Laboratory]
|
   
   
|-  
|-  
|
|
''E. coli'' RS218
''E. coli'' K-12 LW1655F+
|
in progress
|
 
|
no
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=29609 Entrez Genome Project]<br/>
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=527799&lvl=3&lin=f&keep=1&srchmode=1&unlock 527799]
|-
|
''E. coli'' NC-7
|
in progress
|
 
|
not yet
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=29837 Entrez Genome Project]<br/>
Cell wall-less L-form derivative of ''E. coli'' K-12.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=531853&lvl=3&lin=f&keep=1&srchmode=1&unlock 531853]
|-
|
''E. coli'' O157:H7 EDL933
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NC_002655.2 NC_002655.2]
|
no
|
[http://www.ericbrc.org/portal/eric/escherichiaGenomeDetail Enteropathogen Resource Integration Center (ERIC)] <br/>
 
Enterohemorrhagic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=155864 155864]
|-
|
''E. coli'' SE11
|
complete
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NC_011415 NC_011415]
|
no
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=18057 Entrez Genome Project]<br/>
Human commensal isolate.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=409438 409438]
|-
|
''E. coli'' W
|
in progress
|
 
|
no
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=31105 Entrez Genome Project]<br/>
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=566546&lvl=3&lin=f&keep=1&srchmode=1&unlock 566546]
|-
|
''E. coli'' c7122
|
|
in progress
in progress
Line 545: Line 768:
no
no
|
|
[[PMID:16988236]]<ref name=PMID:16988236/>
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=20733 Entrez Genome Project]<br/>
<br/>
|
[http://www.genome.wisc.edu/sequencing/rs218.htm University of Wisconsin Genome Center]<br/>
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=475609&lvl=3&lin=f&keep=1&srchmode=1&unlock 475609]  
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=Retrieve&dopt=Overview&list_uids=19411 Entrez Genome Project]
|-
<br/>
|
''E. coli'' K1; Neonatal meningitis ''E. coli'' (NMEC).  
<i>E. coli</i> S88
|
complete
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genome&Cmd=ShowDetailView&TermToSearch=23515 NC_011742]
|
no
|
[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html GenoScope]
 
Serotype O45:K1 strain, isolated from a case of meningitis.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585035 585035]
|-
|
<i>E. coli</i> ED1a
|
complete
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=23518 NC_011745]
|
no
|
[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html GenoScope]
 
Avirulent serogroup O81.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585397 585397]  
|-
|
<i>E. coli</i> IAI1
|
complete
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=23514 NC_011741]
|
no
|
[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html GenoScope]
 
Serogroup O8.
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585034 585034]  
|-
|
<i>E. coli</i> IAI39
|
complete
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=23523 NC_011750]
|
no
|
[http://www.genoscope.cns.fr/spip/-Escherichia-fergusonii-coli-.html Genoscope]
 
Serotype O7:K1.
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585057 585057]
|-
|
''E. coli'' 55989
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_011748 NC_011748]
|
no
|
PMID:19165319
 
Pathogenic strain.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585055 585055]
|-
|
[[BW2952|''E. coli'' BW2952 MC4100(MuLac)]]
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_012759 NC_012759]
|
yes
|
PMID:19376874
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=595496&lvl=3&lin=f&keep=1&srchmode=1&unlock 595496]
|-
|
''E.coli'' UMN026
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_011751 NC_011751]
|
no
|
PMID:19165319
 
Pathogenic strain serotype O17:K52:H18
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=585056 585056]
|-
|
''E.coli'' O103:H2 str. 12009
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_013353 NC_013353]
|
no
|
PMID:19815525
 
Pathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=585395&lvl=3&lin=f&keep=1&srchmode=1&unlock 585395]
|-
|
''E.coli'' O111:H- str. 11128
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_013364 NC_013364]
|
no
|
PMID:19815525
 
Pathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=585396&lvl=3&lin=f&keep=1&srchmode=1&unlock 585396]
|-
|
''E. coli'' O127:H6 str. E2348/69
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_011601 NC_011601]
|
no
|
PMID:18952797
 
Pathogenic.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=574521 574521]
|-
|
[[DH1|''E. coli'' K-12 DH1]]
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/CP001637 CP001637]
|
not yet
|
Escherichia coli K12 DH1, ATCC 33849
|
|-
|
''E. coli'' O55:H7 CB9615
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_013941 NC_013941]
|
no
|
 
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=701177&lvl=3&lin=f&keep=1&srchmode=1&unlock 701177]
|-
|
''E. coli'' O26:H11 str. 11368
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/NC_013361 NC_013361]
|
no
|
enteropathogenic strain, serovar = O26:H11
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=573235&lvl=3&lin=f&keep=1&srchmode=1&unlock 573235]
|-
|
''E. coli'' IHE3034
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/CP001969 CP001969]
|
no
|
Extraintestinal Pathogenic
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=714962&lvl=3&lin=f&keep=1&srchmode=1&unlock 714962]
|-
|
''E. coli'' SE15
|
complete
|
[http://www.ncbi.nlm.nih.gov/nuccore/AP009378 AP009378]]
|
no
|
Commensal strain.
|
[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=431946&lvl=3&lin=f&keep=1&srchmode=1&unlock 431946]


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Latest revision as of 22:09, 27 July 2010

Go to the E. coli Gene Lists in EcoliWiki

EcoliWiki plans to create gene lists for all available laboratory E. coli K-12, B, and C strains. Although pathogenic strains of E. coli are not the focus of EcoliWiki, numerous strains of E. coli, non-pathogenic or pathogenic, have been sequenced or projects are in progress to do so. Use this table to track which genomes are available and from where. Please add or edit any strains you know are being sequenced or are finished.

Strain Sequencing status Accessions (if applicable) In EcoliWiki Comments Taxon ID

MG1655

complete

NC_000913

yes

PMID:9278503[1]

511145

W3110

complete

AC_000091

yes

PMID:16738553[2]

316407

DH10B

complete

NC_010473

yes

PMID:18245285[3]

This genome has now been incorporated into EcoliWiki.

316385

REL606

complete

NC_012967

yes

Information about the genes of this E. coli B strain is now available from EcoliWiki International E. coli B Consortium
Entrez Genome Project

413997

E. coli BL21 (DE3)

complete

CP001509.3 & NC_012947.1 & CP001665.1

not yet

We are working on adding this strain to EcoliWiki.
DOE Joint Genome Institute
Entrez Genome Project

469008

E. coli 101-1

in progress

Whole Genome Shotgun Sequence 101-1

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

Enteroaggregative.

358709

E. coli 53638

in progress

Whole Genome Shotgun Sequence 53638

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteroinvasive.

344610

E. coli B171

in progress

Whole Genome Shotgun Sequence B171

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteropathogenic.

344601

E. coli B7A

in progress

Whole Genome Shotgun Sequence B7A

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterotoxigenic.

340184

E. coli E110019

in progress

Whole Genome Shotgun Sequence E110019

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

Atypical enteropathogenic.

340186

E. coli E22

in progress

Whole Genome Shotgun Sequence E22

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteropathogenic.

340185

E. coli E24377A

complete

NC_009801

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterotoxigenic.

331111

E. coli F11

in progress

Whole Genome Shotgun Sequence F11

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Extra-intestinal pathogenic.

340197

E. coli HS

complete

NC_009800

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Human commensal isolate.

331112

E. coli SMS-3-5

complete

NC_010498

no

PMID:18708504[4]
SECEC SMS-3-5 at JCVI
Entrez Genome Project
Highly antibiotic resistant, including ciprofloxacin & moxifloxacin.

439855

E. coli O157:H7 EC4024

in progress

Whole Genome Shotgun Sequence EC4024

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444454

E. coli O157:H7 EC4042

in progress

Whole Genome Shotgun Sequence EC4042

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.


444449

E. coli O157:H7 EC4045

in progress

Whole Genome Shotgun Sequence EC4045

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444448

E. coli O157:H7 EC4076

in progress

Whole Genome Shotgun Sequence EC4076

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444453

E. coli O157:H7 EC4113

in progress

Whole Genome Shotgun Sequence EC4113

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444452

E. coli O157:H7 EC4115

complete

NC_011353

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444450

E. coli O157:H7 EC4196

in progress

Whole Genome Shotgun Sequence EC4196

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444451

E. coli O157:H7 EC4206

in progress

Whole Genome Shotgun Sequence EC4206

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

444447

E. coli O157:H7 EC4401

in progress

Whole Genome Shotgun Sequence EC4401

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

478004

E. coli O157:H7 EC4486

in progress

Whole Genome Shotgun Sequence EC4486

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

478005

E. coli O157:H7 EC4501

in progress

Whole Genome Shotgun Sequence EC4501

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

478006

E. coli O157:H7 EC508

in progress

Whole Genome Shotgun Sequence EC508

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

478007

E. coli O157:H7 TW14359

complete

NC_013008

no

Entrez Genome Project
Enterohemorrhagic.

544404

E. coli O157:H7 EC869

in progress

Whole Genome Shotgun Sequence EC869

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

478008

E. coli O157:H7 FRIK966

in progress

no

MBRI
Entrez Genome Project
Bovine isolate; does not express Shiga toxin.

570506

E. coli O157:H7 TW14588

in progress

Whole Genome Shotgun Sequence TW14588

no

JCVI
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enterohemorrhagic.

502346

E. coli O157:H7 GZ-021210/cattle

in progress

no

Entrez Genome Project
Enterohemorrhagic bovine isolate.

410290

E. coli O157:H7

complete

NC_002695

no

PMID:11258796[5]
This strain is also referred to as E. coli O157:H7 Sakai
Entrez Genome Project

83334

E. coli APEC O1

complete

NC_008563

no

PMID:17293413[6]
Nolan Lab Bacterial Pathogenesis Laboratory
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

405955

E. coli UTI89

complete

NC_007946

no

PMID:16585510[7]
Entrez Genome Project

364106

E. coli 042

complete

FN554766

no

Sanger Institute
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Enteroaggregative.

216592

E. coli 536

complete

NC_008253

no

PMID:16879640[8]
University of Gottingen
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Uropathogenic.

362663

E. coli RS218

in progress

no

PMID:16988236[9]
University of Wisconsin Genome Center
Entrez Genome Project
E. coli K1; Neonatal meningitis E. coli (NMEC).

439184

E. coli CFT073

complete

NC_004431

no

PMID:12471157[10]
University of Wisconsin Genome Center
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project
Uropathogenic.

199310

E. coli ATCC 8739

complete

NC_010468

not yet

E. coli Crooks strain (sometimes misnamed as E. coli B strain (see page for ATCC 8739)
Joint Genome Institute
Enteropathogen Resource Integration Center (ERIC)
Entrez Genome Project

481805

E. coli F18+

in progress

no

Entrez Genome Project

488477

E. coli 789 A/C 1

in progress

no

Gottingen Genomics Laboratory

E. coli K-12 LW1655F+

in progress

no

Entrez Genome Project

527799

E. coli NC-7

in progress

not yet

Entrez Genome Project
Cell wall-less L-form derivative of E. coli K-12.

531853

E. coli O157:H7 EDL933

complete

NC_002655.2

no

Enteropathogen Resource Integration Center (ERIC)

Enterohemorrhagic.

155864

E. coli SE11

complete

NC_011415

no

Entrez Genome Project
Human commensal isolate.

409438

E. coli W

in progress

no

Entrez Genome Project

566546

E. coli c7122

in progress

no

Entrez Genome Project

475609

E. coli S88

complete

NC_011742

no

GenoScope

Serotype O45:K1 strain, isolated from a case of meningitis.

585035

E. coli ED1a

complete

NC_011745

no

GenoScope

Avirulent serogroup O81.

585397

E. coli IAI1

complete

NC_011741

no

GenoScope

Serogroup O8.

585034

E. coli IAI39

complete

NC_011750

no

Genoscope

Serotype O7:K1.

585057

E. coli 55989

complete

NC_011748

no

PMID:19165319[11]

Pathogenic strain.

585055

E. coli BW2952 MC4100(MuLac)

complete

NC_012759

yes

PMID:19376874[12]

595496

E.coli UMN026

complete

NC_011751

no

PMID:19165319[11]

Pathogenic strain serotype O17:K52:H18

585056

E.coli O103:H2 str. 12009

complete

NC_013353

no

PMID:19815525[13]

Pathogenic.

585395

E.coli O111:H- str. 11128

complete

NC_013364

no

PMID:19815525[13]

Pathogenic.

585396

E. coli O127:H6 str. E2348/69

complete

NC_011601

no

PMID:18952797[14]

Pathogenic.

574521

E. coli K-12 DH1

complete

CP001637

not yet

Escherichia coli K12 DH1, ATCC 33849

E. coli O55:H7 CB9615

complete

NC_013941

no

701177

E. coli O26:H11 str. 11368

complete

NC_013361

no

enteropathogenic strain, serovar = O26:H11

573235

E. coli IHE3034

complete

CP001969

no

Extraintestinal Pathogenic

714962

E. coli SE15

complete

AP009378]

no

Commensal strain.

431946

edit table
  1. ↑ Blattner, FR et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 1453-62 PubMed
  2. ↑ Hayashi, K et al. (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 2006.0007 PubMed
  3. ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
  4. ↑ Fricke, WF et al. (2008) Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5. J. Bacteriol. 190 6779-94 PubMed
  5. ↑ Hayashi, T et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8 11-22 PubMed
  6. ↑ Johnson, TJ et al. (2007) The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. J. Bacteriol. 189 3228-36 PubMed
  7. ↑ Chen, SL et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc. Natl. Acad. Sci. U.S.A. 103 5977-82 PubMed
  8. ↑ Hochhut, B et al. (2006) Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. Mol. Microbiol. 61 584-95 PubMed
  9. ↑ Teng, CH et al. (2006) Effects of ompA deletion on expression of type 1 fimbriae in Escherichia coli K1 strain RS218 and on the association of E. coli with human brain microvascular endothelial cells. Infect. Immun. 74 5609-16 PubMed
  10. ↑ Welch, RA et al. (2002) Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 99 17020-4 PubMed
  11. ↑ 11.0 11.1 Touchon, M et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5 e1000344 PubMed
  12. ↑ Ferenci, T et al. (2009) Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. J. Bacteriol. 191 4025-9 PubMed
  13. ↑ 13.0 13.1 Ogura, Y et al. (2009) Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 106 17939-44 PubMed
  14. ↑ Iguchi, A et al. (2009) Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J. Bacteriol. 191 347-54 PubMed
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