rppH:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''
''Arabidopsis thaliana''
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* AT3G10620 (score: 1.000; bootstrap: 100%)
* AT3G10620 (score: 1.000; bootstrap: 100%)
* AT5G06340 (score: 0.359)
* AT5G06340 (score: 0.359)
* AT1G30110 (score: 0.275)  
* AT1G30110 (score: 0.275)
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Dictyostelium discoideum''
''Dictyostelium discoideum''
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* DDB0189010 (score: 1.000; bootstrap: 100%)
* DDB0189010 (score: 1.000; bootstrap: 100%)
* DDB0187173 (score: 0.509)  
* DDB0187173 (score: 0.509)
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Oryza gramene''
''Oryza gramene''
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* O24005 (score: 1.000; bootstrap: 100%)
* O24005 (score: 1.000; bootstrap: 100%)
* Q7XPT6 (score: 0.623)  
* Q7XPT6 (score: 0.623)
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Xenopus tropicalis''
''Xenopus tropicalis''
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* ENSXETP00000013949 (score: 1.000; bootstrap: 100%)  
* ENSXETP00000013949 (score: 1.000; bootstrap: 100%)
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Shigella flexneri''
''Shigella flexneri''
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YGDP  
YGDP
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From SHIGELLACYC  
From SHIGELLACYC  
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|-  
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''E. coli'' O157  
''E. coli'' O157
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YGDP  
YGDP
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00293 PF00293  NUDIX domain]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00293 PFAM:PF00293]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55811 SUPERFAMILY:55811]
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[[EcoCyc]]
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EcoCyc:G7459
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13091
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004022
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2896
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009276
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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===Categories===
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Latest revision as of 07:17, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT3G10620 (score: 1.000; bootstrap: 100%)
  • AT5G06340 (score: 0.359)
  • AT1G30110 (score: 0.275)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0189010 (score: 1.000; bootstrap: 100%)
  • DDB0187173 (score: 0.509)

From Inparanoid:20070104

Oryza gramene

  • O24005 (score: 1.000; bootstrap: 100%)
  • Q7XPT6 (score: 0.623)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000013949 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YGDP

From SHIGELLACYC

E. coli O157

YGDP

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00293 NUDIX domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:55811

EcoCyc

EcoCyc:G7459

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13091

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004022

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2896

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009276

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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