dipZ:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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DSBD  
DSBD  
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From SHIGELLACYC  
From SHIGELLACYC, found in beta and gamma proteobacteria
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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Caulobacter crescentus, Salmonella typhimurium
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ScsB
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PMID:15380548 PMID:9260936
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eubacteria, archaea, plant (studied well in Rhodobacter capsulatus)
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CcdA
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PMID:12145197: homologs of transmembrane domain of DsbD: most of them contain only 6 transmembrane segments
 
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===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02683 PF02683  Cytochrome C biogenesis protein transmembrane region]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52833 SUPERFAMILY:52833]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10438:SF20 PTHR10438:SF20]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=74863 SUPERFAMILY:74863]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02683 PFAM:PF02683]
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00085 PF00085  Thioredoxin]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF11412 PF11412  Disulphide bond corrector protein DsbC]
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[[EcoCyc]]
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EcoCyc:EG12178
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12178
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002071
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2095
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0013539
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
<references/>
<references />
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===Categories===
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Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G54290 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

DSBD

From SHIGELLACYC, found in beta and gamma proteobacteria

E. coli O157

DSBD

From ECOO157CYC

Caulobacter crescentus, Salmonella typhimurium

ScsB

PMID:15380548[1] PMID:9260936[2]

eubacteria, archaea, plant (studied well in Rhodobacter capsulatus)

CcdA

PMID:12145197[3]: homologs of transmembrane domain of DsbD: most of them contain only 6 transmembrane segments

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02683 Cytochrome C biogenesis protein transmembrane region

Superfamily (EcoliWiki Page)

SUPERFAMILY:52833

Panther (EcoliWiki Page)

PTHR10438:SF20

Superfamily (EcoliWiki Page)

SUPERFAMILY:74863

Pfam (EcoliWiki Page)

PF00085 Thioredoxin

Pfam (EcoliWiki Page)

PF11412 Disulphide bond corrector protein DsbC

EcoCyc

EcoCyc:EG12178

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12178

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002071

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2095

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013539

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Porat, A et al. (2004) The unusual transmembrane electron transporter DsbD and its homologues: a bacterial family of disulfide reductases. Res. Microbiol. 155 617-22 PubMed
  2. ↑ Gupta, SD et al. (1997) A Salmonella typhimurium genetic locus which confers copper tolerance on copper-sensitive mutants of Escherichia coli. J. Bacteriol. 179 4977-84 PubMed
  3. ↑ Katzen, F et al. (2002) Evolutionary domain fusion expanded the substrate specificity of the transmembrane electron transporter DsbD. EMBO J. 21 3960-9 PubMed

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