emrE:Quickview: Difference between revisions

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{{Tab On|Quickview|emrE}}{{Tab|Gene|emrE}}{{Tab|Gene Product(s)|emrE}}{{Tab|Expression|emrE}}{{Tab|Evolution|emrE}}{{Tab|On One Page|emrE}}{{TabsBottom}}
{{Tab On|Quickview|emrE}}{{Tab|Gene|emrE}}{{Tab|Gene Product(s)|emrE}}{{Tab|Expression|emrE}}{{Tab|Evolution|emrE}}{{Tab|On One Page|emrE}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[emrE:Gene|''emrE]]'' (synonyms: ''ECK0534, b0543, JW0531, mvrC, eb, mvrB, G6299'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''emrE''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[emrE:Gene_Product(s)|EmrE product]]<ref name='LIB:Riley_2006'/>: DLP12 prophage; multidrug resistance protein<ref name='LIB:Riley_2006'/>, B0543<ref name='LIB:EcoCyc10.6'/>, MvrC<ref name='LIB:EcoCyc10.6'/>, EmrE<ref name='LIB:EcoCyc10.6'/>
''ECK0534, b0543, JW0531, mvrC, eb, mvrB, G6299''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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EmrE SMR transporter<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
EmrE SMR transporter<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Multidrug resistance pump, DLP12 prophage; methylviologen sensitivity<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DLP12 prophage; multidrug resistance protein<ref name='LIB:Riley_2006'/>, B0543<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MvrC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EmrE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , eb, ECK0534, JW0531, mvrC, b0543''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:renD|renD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:renD|renD]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=emrE&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10629]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000622&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=emrE&loc=MG1655%3A567538..567870,W3110%3A567538..567870,DH10B%3A506870..507202,REL606%3A540205..540537,BW2952%3A470298..470630]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=470298&end=470630&gene=emrE&aa=mnpyiylggailaevigttlmkfsegftrlwpsvgtiicycasfwllaqtlayiptgiayaiwsgvgivlisllswgffgqrldlpaiigmmlicagvliinllsrstph]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=emrE+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=emrE]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
EmrE defunct PDB structures 1S7B and 2F2M, and any conclusions derived from these structures, have been retracted due to a software data inversion error (Ma, 2007; Chang, 2007). Correct structures are now available. EmrE belongs to the SMR efflux pump family, DMT superfamily.  EmrE accomplishes multidrug efflux by coupling conformational changes between two heterodimers with proton gradient. Dual-topology membrane protein.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

emrE

Gene Synonym(s)

ECK0534, b0543, JW0531, mvrC, eb, mvrB, G6299[1][2]

Product Desc.

EmrE SMR transporter[2][3]

Multidrug resistance pump, DLP12 prophage; methylviologen sensitivity[4]

Product Synonyms(s)

DLP12 prophage; multidrug resistance protein[1], B0543[2][1], MvrC[2][1], EmrE[2][1] , eb, ECK0534, JW0531, mvrC, b0543

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): renD[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


EmrE defunct PDB structures 1S7B and 2F2M, and any conclusions derived from these structures, have been retracted due to a software data inversion error (Ma, 2007; Chang, 2007). Correct structures are now available. EmrE belongs to the SMR efflux pump family, DMT superfamily. EmrE accomplishes multidrug efflux by coupling conformational changes between two heterodimers with proton gradient. Dual-topology membrane protein.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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