yncE:Gene Product(s): Difference between revisions

Standard name	YncE
Synonyms	conserved protein^[1], B1452^[2]^[1], YncE^[2]^[1] , ECK1446, JW1447, b1452
Product description	conserved protein^[2]^[3] Secreted protein, function unknown^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0067	F	Seeded from EcoCyc (v14.0)	complete
edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	gyrA	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rpsH	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rpsA	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplE	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplS	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplR	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rpsN	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rpmB	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplP	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplO	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rpsT	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplT	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	hupB	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rpsF	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplU	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	hupA	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplI	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplF	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplM	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rpsC	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplX	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	srmB	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplA	PMID:19402753^[5]	LCMS(ID Probability):99.6 MALDI(Z-score):4.167454
Protein	rplB	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	dapF	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rne	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rplD	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rlmI	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	yfiF	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	rnr	PMID:19402753^[5]	LCMS(ID Probability):99.6
Protein	deaD	PMID:19402753^[5]	LCMS(ID Probability):99.6 MALDI(Z-score):8.929113
Protein	rluB	PMID:19402753^[5]	LCMS(ID Probability):99.6 MALDI(Z-score):9.889276
Protein	minE	PMID:19402753^[5]	LCMS(ID Probability):99.4
Protein	thiC	PMID:19402753^[5]	LCMS(ID Probability):99.4
edit table

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MHLRHLFSSR LRGSLLLGSL LVVSSFSTQA AEEMLRKAVG KGAYEMAYSQ QENALWLATS QSRKLDKGGV VYRLDPVTLE VTQAIHNDLK PFGATINNTT QTLWFGNTVN SAVTAIDAKT GEVKGRLVLD DRKRTEEVRP LQPRELVADD ATNTVYISGI GKESVIWVVD GGNIKLKTAI QNTGKMSTGL ALDSEGKRLY TTNADGELIT IDTADNKILS RKKLLDDGKE HFFINISLDT ARQRAFITDS KAAEVLVVDT RNGNILAKVA APESLAVLFN PARNEAYVTH RQAGKVSVID AKSYKVVKTF DTPTHPNSLA LSADGKTLYV SVKQKSTKQQ EATQPDDVIR IAL
Length	353
Mol. Wt	38.613 kDa
pI	9.2 (calculated)
Extinction coefficient	28,420 (calc based on 8 Y, 3 W, and 0 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
motif	1-30	UniProt Manual:Signal Peptides	UniProt:P76116
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yncE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16129411	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946006	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0004843	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P76116	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G6763	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13775	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946006	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003352	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3537	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

[back to top]

See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.00 ^5.01 ^5.02 ^5.03 ^5.04 ^5.05 ^5.06 ^5.07 ^5.08 ^5.09 ^5.10 ^5.11 ^5.12 ^5.13 ^5.14 ^5.15 ^5.16 ^5.17 ^5.18 ^5.19 ^5.20 ^5.21 ^5.22 ^5.23 ^5.24 ^5.25 ^5.26 ^5.27 ^5.28 ^5.29 ^5.30 ^5.31 ^5.32 ^5.33 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed

yncE:Gene Product(s): Difference between revisions

Latest revision as of 20:38, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 1: / Line 1: @@
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+-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
 <noinclude>{{TabsTop}}
 {{Tab|Quickview|yncE}}{{Tab|Gene|yncE}}{{Tab On|Gene Product(s)|yncE}}{{Tab|Expression|yncE}}{{Tab|Evolution|yncE}}{{Tab|On One Page|yncE}}{{TabsBottom}}
@@ Line 9: / Line 18: @@
 |{{Sub}}[[#Localization |Localization]]
 |{{Sub}}[[#Sequence|Sequence]]
+|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
 |{{Sub}}[[#Structure|Structure]]
 |{{Sub}}[[#Gene Product Resources|Resources]]
@@ Line 18: / Line 28: @@
 </noinclude>
 ==Nomenclature==
-<!--box uid=421aa90e079fa326b6494f812ad13e79..I469fdb451e7e2-->
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+{|   id="F46aa69c67ab4c"  class=" tableEdit Product_nomenclature_table"
 |-
-!{{table heading style}} |Standard name
+!align=left {{table heading style}} |Standard name
-|
+||
-YncE product
+YncE
 |-
-!{{table heading style}} |Synonyms
+!align=left {{table heading style}} |Synonyms
-|
+||
-conserved protein<ref name='LIB:Riley_2006'/>, B1452<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YncE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''conserved protein<ref name='LIB:Riley_2006'/>, B1452<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YncE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1446, JW1447, b1452''
 |-
-!{{table heading style}} |Product description
+!align=left {{table heading style}} |Product description
-|
+||
-conserved protein<ref name='LIB:EcoCyc10.6'/>; conserved protein<ref name='LIB:EcoCyc11.1'/>
+conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Secreted protein, function unknown<ref name='LIB:EcoGene'/>
 |-
-!{{table heading style}} |EC number (for enzymes)
+!align=left {{table heading style}} |EC number (for enzymes)
-|
+||
-*
-|-
-|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..I469fdb451e7e2&page=&pagename={{FULLPAGENAMEE}} edit table]
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.22902.F46aa69c67ab4c&page=22902&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
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+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.F46aa69c67ab4c-->
-{{Product_nomenclature_help}}
 <protect><!--Nomenclature_notes--></protect>
 ===Notes===
@@ Line 48: / Line 66: @@
 ==Function==
+{{BacktoTop}}
 <protect>
-===Gene Ontology===
+<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.22902.D46aa69c77b1de-->
-<!--box uid=421aa90e079fa326b6494f812ad13e79..C469fdb45be2d6-->
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-<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
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+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Product_GO_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46aa69c77b1de"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
-|-class='sortbottom'
+|-
-|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..C469fdb45be2d6&page=&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
+|
+|
+GO:0000166
+|
+nucleotide binding
+|
+GOA:spkw<br />SP_KW:GO_REF:0000004
+|
+IEA: Inferred from Electronic Annotation
+|
+SP_KW:KW-0547
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0005524
+|
+ATP binding
+|
+GOA:spkw<br />SP_KW:GO_REF:0000004
+|
+IEA: Inferred from Electronic Annotation
+|
+SP_KW:KW-0067
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|- class="tableEdit_footer"
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 |}
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-{{Product_GO_help}}
-===Interactions===
+<span id="Interactions"></span><big>'''Interactions'''</big>
-<!--box uid=421aa90e079fa326b6494f812ad13e79..N469fdb4606aec-->
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+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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 |- {{table heading style}}
-!Partner Type!!Partner!!Notes
+!|Partner Type!!Partner!!Notes!!References!!Evidence
-|-class='sortbottom'
+|-
-|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..N469fdb4606aec&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
+|
+Protein
+|
+gyrA
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsH
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsA
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplE
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplS
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplR
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsN
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpmB
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplP
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplO
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsT
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplT
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+hupB
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsF
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplU
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+hupA
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplI
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplF
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplM
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsC
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplX
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+srmB
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplA
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6 MALDI(Z-score):4.167454
+|-
+|
+Protein
+|
+rplB
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+dapF
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rne
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rplD
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rlmI
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+yfiF
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rnr
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+deaD
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6 MALDI(Z-score):8.929113
+|-
+|
+Protein
+|
+rluB
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6 MALDI(Z-score):9.889276
+|-
+|
+Protein
+|
+minE
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.4
+|-
+|
+Protein
+|
+thiC
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.4
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.22902.R46aa69c8010ab&page=22902&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
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-{{Product_interactions_help}}
 <!--Function_notes--></protect>
 ===Notes===
 ==Localization==
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.B46a7fc397bbcf-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Product_localization_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46a7fc397bbcf"  class=" tableEdit Product_localization_table"
+|- {{table heading style}}
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
+|- class="tableEdit_footer"
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+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.B46a7fc397bbcf-->
 <protect><!--Localization_notes--></protect>
 ===Notes===
 ==Structure and Physical Properties==
+{{BacktoTop}}
 <protect>
-===Physical Properties===
+<span id="Sequence"></span><big>'''Physical Properties'''</big>
-<!--box uid=421aa90e079fa326b6494f812ad13e79..J469fdb473c212-->
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-{|{{Prettytable}}
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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+{|   id="A46aa69c9c8a23"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
-!{{table heading style}} |Sequence
+!align=left {{table heading style}} |Sequence
-|
+||
 [http://biocyc.org/ECOLI/sequence-aa?object=G6763-MONOMER at EcoCyc]
 <pre>MHLRHLFSSR LRGSLLLGSL LVVSSFSTQA AEEMLRKAVG KGAYEMAYSQ QENALWLATS
@@ Line 96: / Line 567: @@
 AKSYKVVKTF DTPTHPNSLA LSADGKTLYV SVKQKSTKQQ EATQPDDVIR IAL</pre>
 |-
-!{{table heading style}} |Mol. Wt
+!align=left {{table heading style}} |Length
+||
+|-
+!align=left {{table heading style}} |Mol. Wt
+||
+.613 kDa
+|-
+!align=left {{table heading style}} |pI
+||
+.2 (calculated)
+|-
+!align=left {{table heading style}} |Extinction coefficient
+||
+,420 (calc based on 8 Y, 3 W, and 0 C residues)
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.22902.A46aa69c9c8a23&page=22902&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.A46aa69c9c8a23-->
+<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
+<tr align="left" valign="top">
+<td><!--box uid=421aa90e079fa326b6494f812ad13e79.22902.Q46aa69ca37f7e-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Product_domains_motifs_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46aa69ca37f7e"  class=" tableEdit Product_motif_table dataTable"
+|- {{table heading style}}
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+motif
+|
+-30
+|
+[[uniprotmanual:signal|UniProt Manual:Signal Peptides]]
 |
-.61 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
+[http://www.uniprot.org/uniprot/P76116#section_features UniProt:P76116]
-|-
-!{{table heading style}} |pI
 |
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.22902.Q46aa69ca37f7e&page=22902&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.Q46aa69ca37f7e--></td>
+<td>
+<!-- motifs column 2-->
+<motif_map/>
+</td>
+</tr>
+</table>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.D46a7fc3b1dbba-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Product_structure_help}}
+{|   id="D46a7fc3b1dbba"  class=" tableEdit Product_structure_table"
 |-
-!{{table heading style}} |Extinction coefficient
+!align=left {{table heading style}} |Structures
-|
+||
-(calc based on 8 Y, 3 W, and 0 C residues)
+<beststructure>
+gene=yncE
+taxon=562,83333
+</beststructure>
 |-
-|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..J469fdb473c212&page=&pagename={{FULLPAGENAMEE}} edit table]
+!align=left {{table heading style}} |Models
+||
+View models at:
+* [http://www.proteinmodelportal.org/query/uniprot/P76116 Protein Model Portal]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P76116 PSI-PRED (P76116)]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P76116 Genomes TO Protein (P76116)] (GTOP)
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.22902.D46a7fc3b1dbba&page=22902&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79..J469fdb473c212-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.D46a7fc3b1dbba-->
-{{Product_physical_properties_help}}
-===Domains/Motifs/Modification Sites===
+</td><td></protect>
-<!--box uid=421aa90e079fa326b6494f812ad13e79..W469fdb4756650-->
+==== Structure figures ====
-<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
-{|class = 'sortable' {{Prettytable}} id='42046'
-|- {{table heading style}}
-!Type!!Residues!!Description!!Notes
-|-class='sortbottom'
-|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..W469fdb4756650&page=&pagename={{FULLPAGENAMEE}} edit table] || || ||
-|}
-<!--box uid=421aa90e079fa326b6494f812ad13e79..W469fdb4756650-->
-{{Product_domains_motifs_help}}
-===Structure===
-{{Product_structure_help}}
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
-<!--Structure_notes--></protect>
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
 ==Gene Product Resources==
-<!--box uid=421aa90e079fa326b6494f812ad13e79..A469fdb476e469-->
+{{BacktoTop}}
-<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.B46aa69cae00a1-->
-{|class = 'sortable' {{Prettytable}} id='42047'
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Product_resources_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46aa69cae00a1"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
-!Resource type!!Source!!Notes/Reference
+!|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
-|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..A469fdb476e469&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.22902.B46aa69cae00a1&page=22902&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79..A469fdb476e469-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.B46aa69cae00a1-->
-{{Product_resources_help}}
 <protect><!--Resources_notes--></protect>
 ===Notes===
 ==Accessions in Other Databases==
-<!--box uid=421aa90e079fa326b6494f812ad13e79..G469fdb4784885-->
+{{BacktoTop}}
-<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.X46aa69cb3f5eb-->
-{|class = 'sortable' {{Prettytable}} id='42048'
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Gene_accessions_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46aa69cb3f5eb"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
-!Database!!Accession!!Notes
+!|Database!!Accession!!Notes
 |-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16129411 GI:16129411]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_415969.1 GeneID:946006]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0004843
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P76116 UniProtKB/Swiss-Prot:P76116]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:G6763
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[[EcoGene]]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6763-MONOMER EcoCyc:G6763-MONOMER]
+EcoGene:EG13775
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://www.expasy.ch/cgi-bin/sprot-search-ac?P76116 UniProt:P76116]
+[http://www.ncbi.nlm.nih.gov/gene?term=946006 GeneID:946006]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415969 RefSeq:NP_415969]
+RegulonDB:ECK120003352
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P76116 ModBase:P76116]
+EchoBASE:EB3537
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
-|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..G469fdb4784885&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.22902.X46aa69cb3f5eb&page=22902&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79..G469fdb4784885-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.X46aa69cb3f5eb-->
-{{Product_accessions_help}}
 <protect><!--Accessions_notes--></protect>
 ===Notes===
@@ Line 188: / Line 789: @@
 ==Links==
+{{BacktoTop}}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.F46a7fc3dd6587-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46a7fc3dd6587"  class=" tableEdit Links_table"
+|- {{table_heading_style}}
+!|Name!!URL!!Comments
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.22902.F46a7fc3dd6587&page=22902&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.22902.F46a7fc3dd6587-->
 <noinclude>
 ==References==
+{{BacktoTop}}
 {{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
+===Categories===
+{{BacktoTop}}
+[[Category:Proteins]]

yncE:Gene Product(s): Difference between revisions

Latest revision as of 20:38, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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