yncE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YncE

Synonyms

conserved protein[1], B1452[2][1], YncE[2][1] , ECK1446, JW1447, b1452

Product description

conserved protein[2][3]

Secreted protein, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

gyrA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsH

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplE

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplR

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplO

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplT

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

hupB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsF

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplF

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

srmB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):4.167454

Protein

rplB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

dapF

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rne

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rlmI

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yfiF

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rnr

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

deaD

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):8.929113

Protein

rluB

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):9.889276

Protein

minE

PMID:19402753[5]

LCMS(ID Probability):99.4

Protein

thiC

PMID:19402753[5]

LCMS(ID Probability):99.4

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MHLRHLFSSR LRGSLLLGSL LVVSSFSTQA AEEMLRKAVG KGAYEMAYSQ QENALWLATS
QSRKLDKGGV VYRLDPVTLE VTQAIHNDLK PFGATINNTT QTLWFGNTVN SAVTAIDAKT
GEVKGRLVLD DRKRTEEVRP LQPRELVADD ATNTVYISGI GKESVIWVVD GGNIKLKTAI
QNTGKMSTGL ALDSEGKRLY TTNADGELIT IDTADNKILS RKKLLDDGKE HFFINISLDT
ARQRAFITDS KAAEVLVVDT RNGNILAKVA APESLAVLFN PARNEAYVTH RQAGKVSVID
AKSYKVVKTF DTPTHPNSLA LSADGKTLYV SVKQKSTKQQ EATQPDDVIR IAL
Length

353

Mol. Wt

38.613 kDa

pI

9.2 (calculated)

Extinction coefficient

28,420 (calc based on 8 Y, 3 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-30

UniProt Manual:Signal Peptides

UniProt:P76116


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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yncE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129411

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946006

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004843

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76116

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6763

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13775

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946006

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003352

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3537

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 5.28 5.29 5.30 5.31 5.32 5.33 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed

Categories

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