dnaX:Quickview: Difference between revisions

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{|   id="G49aee40e2a408"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[dnaX:Gene|''dnaX]]'' (synonyms: ''ECK0464, b0470, JW0459, dnaZ'')<ref name='LIB:Riley_2006'/>
''dnaX''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[dnaX:Gene_Product(s)|DnaX product, DnaX product]]<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>: B0470 product, DnaZ product, DNA elongation factor III product
''ECK0464, b0470, JW0459, dnaZ''<ref name='LIB:Riley_2006'/>, dnaZ''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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DNA polymerase III, &tau; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
* DNA polymerase III, gamma subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
* DNA polymerase III, tau subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
* Component of
** [[:Category:Complex:DNA polymerase III, preinitiation complex|DNA polymerase III, preinitiation complex]]<ref name='LIB:EcoCyc11.1'/>;
** [[:Category:Complex:DNA polymerase III, τ subunit dimer|DNA polymerase III, τ subunit dimer]]<ref name='LIB:EcoCyc11.1'/>
** [[:Category:Complex:DNA polymerase III, holoenzyme|DNA polymerase III, holoenzyme]]<ref name='LIB:EcoCyc11.1'/>


Component of [[:Category:Complex:DNA polymerase III, &tau; subunit dimer|DNA polymerase III, &tau; subunit dimer]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:DNA polymerase III, holoenzyme|DNA polymerase III, holoenzyme]]<ref name='LIB:EcoCyc11.1'/>


DNA polymerase III holoenzyme, tau and gamma ATPase subunits; gamma chain (aa 1-431) is main subunit of the clamp loader complex<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DNA polymerase III/DNA elongation factor III, tau and gamma subunits<ref name='LIB:Riley_2006'/>, DnaZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0470<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , dnaZ, ECK0464, JW0459, b0470''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:dnaX|dnaX]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:dnaX|dnaX]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dnaX&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10245]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000239&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dnaX&loc=MG1655%3A491316..493247,W3110%3A491316..493247,DH10B%3A430647..432578,REL606%3A464159..466090,BW2952%3A394075..396006]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=394075&end=396006&gene=dnaX&aa=msyqvlarkwrpqtfadvvgqehvltalanglslgrihhaylfsgtrgvgktsiarllakglncetgitatpcgvcdncreieqgrfvdlieidaasrtkvedtrdlldnvqyapargrfkvylidevhmlsrhsfnallktleeppehvkfllattdpqklpvtilsrclqfhlkaldveqirhqlehilneehiahepralqllaraaegslrdalsltdqaiasgdgqvstqavsamlgtldddqalslveamveangervmalineaaargieweallvemlgllhriamvqlspaalgndmaaielrmrelartipptdiqlyyqtlligrkelpyapdrrmgvemtllralafhprmplpepevprqsfapvaptavmtptqvppqpqsapqqaptvplpettsqvlaarqqlqrvqgatkakksepaaatrarpvnnaalerlasvtdrvqarpvpsalekapakkeayrwkattpvmqqkevvatpkalkkalehektpelaaklaaeaierdpwaaqvsqlslpklveqvalnawkeesdnavclhlrssqrhlnnrgaqqklaealsmlkgstveltiveddnpavrtplewrqaiyeeklaqaresiiadnniqtlrrffdaeldeesirpi]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dnaX+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dnaX]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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The tau chain is the full length protein.  The gamma chain is formed by programmed ribosomal frameshifting at codon 431 to a premature stop codon.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dnaX

Gene Synonym(s)

ECK0464, b0470, JW0459, dnaZ[1], dnaZ

Product Desc.


DNA polymerase III holoenzyme, tau and gamma ATPase subunits; gamma chain (aa 1-431) is main subunit of the clamp loader complex[4]

Product Synonyms(s)

DNA polymerase III/DNA elongation factor III, tau and gamma subunits[1], DnaZ[2][1], B0470[2][1] , dnaZ, ECK0464, JW0459, b0470

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dnaX[2]

Regulation/Activity
Quick Links



        

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Notes

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The tau chain is the full length protein. The gamma chain is formed by programmed ribosomal frameshifting at codon 431 to a premature stop codon.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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