Phage lambda orf60a:Gene Product(s): Difference between revisions
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|{{Sub}}[[#Localization |Localization]] | |{{Sub}}[[#Localization |Localization]] | ||
|{{Sub}}[[#Sequence|Sequence]] | |{{Sub}}[[#Sequence|Sequence]] | ||
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]] | |||
|{{Sub}}[[#Structure|Structure]] | |{{Sub}}[[#Structure|Structure]] | ||
|{{Sub}}[[#Gene Product Resources|Resources]] | |{{Sub}}[[#Gene Product Resources|Resources]] | ||
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</noinclude> | </noinclude> | ||
==Nomenclature== | ==Nomenclature== | ||
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{| class=" tableEdit Product_nomenclature_table" | |||
|- | |- | ||
!{{table heading style}} |Standard name | !align=left {{table heading style}} |Standard name | ||
| | || | ||
orf60a | orf60a | ||
|- | |- | ||
!{{table heading style}} |Synonyms | !align=left {{table heading style}} |Synonyms | ||
| | || | ||
orf60a, lambdap39 | orf60a, lambdap39 | ||
|- | |- | ||
!{{table heading style}} |Product description | !align=left {{table heading style}} |Product description | ||
| | || | ||
hypothetical protein | hypothetical protein | ||
|- | |||
!align=left {{table heading style}} |EC number (for enzymes) | |||
|| | |||
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{{Product_nomenclature_help}} | {{Product_nomenclature_help}} | ||
<protect><!--Nomenclature_notes--></protect> | <protect><!--Nomenclature_notes--></protect> | ||
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<big>'''Gene Ontology'''</big> | <big>'''Gene Ontology'''</big> | ||
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!Qualifier!!GO ID!!GO term name!!Reference | !|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status | ||
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<span id="Interactions"></span><big>'''Interactions'''</big> | <span id="Interactions"></span><big>'''Interactions '''</big> | ||
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!|Partner Type!!Partner!!Notes!!References!!Evidence | |||
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===Notes=== | ===Notes=== | ||
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==Localization== | ==Localization== | ||
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!Compartment!!Description!!Evidence!!Notes | !|Compartment!!Description!!Evidence!!Reference/Source!!Notes | ||
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<span id="Sequence"></span><big>'''Physical Properties'''</big> | <span id="Sequence"></span><big>'''Physical Properties'''</big> | ||
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{| class=" tableEdit Product_phys_prop_table" | |||
|- | |- | ||
!{{table heading style}} | | !align=left {{table heading style}} |Name | ||
| | || | ||
|- | |- | ||
!{{table heading style}} | | !align=left {{table heading style}} |Sequence | ||
| | || | ||
<pre>MTHPHDNIRV GAITFVYSVT KRGWVFPGLS VIRNPLKAQR LAEEINNKRG AVCTKHLLLS</pre> | |||
|- | |- | ||
!{{table heading style}} | | !align=left {{table heading style}} |Length | ||
| | || | ||
60 | |||
|- | |||
!align=left {{table heading style}} |Mol. Wt | |||
|| | |||
6.754 kDa | |||
|- | |- | ||
!{{table heading style}} | | !align=left {{table heading style}} |pI | ||
| | || | ||
10.7 (calculated) | |||
|- | |- | ||
| | !align=left {{table heading style}} |Extinction coefficient | ||
|| | |||
6,990 - 7,115 (calc based on 1 Y, 1 W, and 1 C residues) | |||
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<big>'''Domains/Motifs/Modification Sites'''</big> | <span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table> | ||
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!Type!!Residues!!Description!!Notes | !|Type!!Residues!!Description!!Notes!!References | ||
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{{Product_domains_motifs_help}} | {{Product_domains_motifs_help}}</td> | ||
<td> | |||
<!-- motifs column 2--> | |||
<motif_map/> | |||
</td> | |||
</tr> | |||
</table> | |||
<span id= | <table><tr valign='top'><td> | ||
<span id='Structure'></span><big>'''Structure'''</big><br /> | |||
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|- | |||
!align=left {{table heading style}} |Structures | |||
|| | |||
<beststructure> | |||
gene=Phage_lambda_orf60a | |||
taxon=10710 | |||
</beststructure> | |||
|- | |||
!align=left {{table heading style}} |Models | |||
|| | |||
View models at: | |||
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED] | |||
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP) | |||
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{{Product_structure_help}} | {{Product_structure_help}} | ||
<!--Structure_notes--></protect> | </td><td></protect> | ||
==== Structure figures ==== | |||
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===Notes=== | ===Notes=== | ||
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{{BacktoTop}} | {{BacktoTop}} | ||
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!Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
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==Links== | ==Links== | ||
{{BacktoTop}} | {{BacktoTop}} | ||
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{{Links_help}} | {{Links_help}} | ||
<noinclude> | <noinclude> | ||
==References== | ==References== | ||
{{BacktoTop}} | {{BacktoTop}} | ||
{{RefHelp}} | {{RefHelp}} | ||
<references/> | <references /> | ||
__NOTOC__ | __NOTOC__ | ||
===Categories=== | |||
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Latest revision as of 20:19, 17 February 2015
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
orf60a |
|---|---|
| Synonyms |
orf60a, lambdap39 |
| Product description |
hypothetical protein |
| EC number (for enzymes) |
|
| edit table |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Interactions
<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MTHPHDNIRV GAITFVYSVT KRGWVFPGLS VIRNPLKAQR LAEEINNKRG AVCTKHLLLS |
| Length |
60 |
| Mol. Wt |
6.754 kDa |
| pI |
10.7 (calculated) |
| Extinction coefficient |
6,990 - 7,115 (calc based on 1 Y, 1 W, and 1 C residues) |
| edit table |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki. |
Structure figures
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
Categories