Phage lambda cII:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
imported>WikiEntryBot
Automated import of articles
 
touch table
 
(37 intermediate revisions by 6 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|Phage lambda cII}}{{Tab|Gene|Phage lambda cII}}{{Tab On|Gene Product(s)|Phage lambda cII}}{{Tab|Expression|Phage lambda cII}}{{Tab|Evolution|Phage lambda cII}}{{Tab|On One Page|Phage lambda cII}}{{TabsBottom}}
{{Tab|Quickview|Phage lambda cII}}{{Tab|Gene|Phage lambda cII}}{{Tab On|Gene Product(s)|Phage lambda cII}}{{Tab|Expression|Phage lambda cII}}{{Tab|Evolution|Phage lambda cII}}{{Tab|On One Page|Phage lambda cII}}{{TabsBottom}}
Line 9: Line 18:
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Gene Product Resources|Resources]]
Line 18: Line 28:
</noinclude>
</noinclude>
==Nomenclature==
==Nomenclature==
<!--box uid=421aa90e079fa326b6494f812ad13e79..K46a41628dcc9e-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..E46b1700622449-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_nomenclature_help}}
{|  class=" tableEdit Product_nomenclature_table" 
 
|-
|-
!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
|
||
cII
cII
|
cII  
|-
|-
!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
|
||
cII, lambdap59
cII, lambdap59
|
cII, lambdap59  
|-
|-
!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
|
||
antitermination protein
activator  of Pre and Pi
 
|
antitermination protein
 
|-
|-
!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
|
||


|


|-
|- class="tableEdit_footer"
|colspan='3'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..K46a41628dcc9e&page=&pagename={{FULLPAGENAMEE}} edit table]
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..E46b1700622449&page=104241&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..K46a41628dcc9e-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..E46b1700622449-->
{{Product_nomenclature_help}}
{{Product_nomenclature_help}}
<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
Line 57: Line 64:


==Function==
==Function==
{{BacktoTop}}
<protect>
<protect>
===Gene Ontology===
<big>'''Gene Ontology'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79..V46a4162918fb0-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..V46a4162918fb0-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|class = 'sortable' {{Prettytable}} id='95044'
******************************************************************************************
*
*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_GO_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit GO_table_product dataTable" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-class='sortbottom'
|-
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..V46a4162918fb0&page=&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
|
 
|
GO:0019044
|
maintenance of viral latency
|
PMID:9324241
|
IMP: Inferred from Mutant Phenotype
|
 
|
P
|
 
|
complete
|-
|
 
|
GO:0019043
|
establishment of viral latency
|
PMID:12397182
|
IMP: Inferred from Mutant Phenotype
|
 
|
P
|
 
|
complete
|-
|
 
|
GO:0045893
|
positive regulation of transcription, DNA-dependent
|
PMID:2931430
|
IDA: Inferred from Direct Assay
|
 
|
P
|
 
|
complete
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..V46a4162918fb0&page=104241&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_product edit table]</span> || || || || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..V46a4162918fb0-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..V46a4162918fb0-->
{{Product_GO_help}}
{{Product_GO_help}}
===Interactions===


{{Product_interactions_help}}
<span id="Interactions"></span><big>'''Interactions '''</big>
<!--Function_notes--></protect>
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.104241.V4a848f74c87e6-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_interactions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V4a848f74c87e6"  class=" tableEdit Product_interactions_table dataTable" 
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.104241.V4a848f74c87e6&page=104241&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table]</span> || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.104241.V4a848f74c87e6--></protect>
 
 
<!--Function_notes-->
===Notes===
===Notes===


==Localization==
==Localization==
<!--box uid=421aa90e079fa326b6494f812ad13e79..W46a416297a8e8-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..W46a416297a8e8-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|class = 'sortable' {{Prettytable}} id='95046'
******************************************************************************************
*
*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_localization_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit Product_localization_table" 
|- {{table heading style}}
|- {{table heading style}}
!Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..W46a416297a8e8&page=&pagename={{FULLPAGENAMEE}} edit table] || || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..W46a416297a8e8&page=104241&pagename={{FULLPAGENAMEE}}&type=0&template=Product_localization_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..W46a416297a8e8-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..W46a416297a8e8-->
{{Product_localization_help}}
<protect><!--Localization_notes--></protect>
<protect><!--Localization_notes--></protect>
===Notes===
===Notes===


==Structure and Physical Properties==
==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<protect>
===Physical Properties===
<span id="Sequence"></span><big>'''Physical Properties'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79..J46a41629ab394-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..J46a41629ab394-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_physical_properties_help}}
{|  class=" tableEdit Product_phys_prop_table" 
 
|-
|-
!{{table heading style}} |Sequence
!align=left {{table heading style}} |Name
|
||


|-
!align=left {{table heading style}} |Sequence
||
<pre>MVRANKRNEA LRIESALLNK IAMLGTEKTA EAVGVDKSQI SRWKRDWIPK FSMLLAVLEW
<pre>MVRANKRNEA LRIESALLNK IAMLGTEKTA EAVGVDKSQI SRWKRDWIPK FSMLLAVLEW
GVVDDDMARL ARQVAAILTN KKRPAATERS EQIQMEF</pre>  
GVVDDDMARL ARQVAAILTN KKRPAATERS EQIQMEF</pre>
|-
|-
!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Length
|
||
11.06 kDa (calc) 
97
|-
|-
!{{table heading style}} |pI
!align=left {{table heading style}} |Mol. Wt
|
||
11.055 kDa
|-
|-
!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |pI
|
||
10.1 (calculated)
|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..J46a41629ab394&page=&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table heading style}} |Extinction coefficient
||
16,500 (calc based on 0 Y, 3 W, and 0 C residues)
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..J46a41629ab394&page=104241&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..J46a41629ab394-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..J46a41629ab394-->
{{Product_physical_properties_help}}
{{Product_physical_properties_help}}
===Domains/Motifs/Modification Sites===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..L46a41629dbd14-->
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<tr align="left" valign="top">
{|class = 'sortable' {{Prettytable}} id='95048'
<td><!--box uid=421aa90e079fa326b6494f812ad13e79..L46a41629dbd14-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_domains_motifs_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit Product_motif_table dataTable" 
|- {{table heading style}}
|- {{table heading style}}
!Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..L46a41629dbd14&page=&pagename={{FULLPAGENAMEE}} edit table] || || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..L46a41629dbd14&page=104241&pagename={{FULLPAGENAMEE}}&type=0&template=Product_motif_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..L46a41629dbd14-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..L46a41629dbd14-->
{{Product_domains_motifs_help}}
{{Product_domains_motifs_help}}</td>
===Structure===
<td>
<!-- motifs column 2-->
<motif_map/>
</td>
</tr>
</table>
 
<table><tr valign='top'><td>
<span id='Structure'></span><big>'''Structure'''</big><br />
<!--box uid=421aa90e079fa326b6494f812ad13e79..N46a4162a17d52-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..N46a4162a17d52-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|class = 'sortable' {{Prettytable}} id='95049'
******************************************************************************************
|- {{table heading style}}
*
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
|-class='sortbottom'
*
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..N46a4162a17d52&page=&pagename={{FULLPAGENAMEE}} edit table] || || || ||
****************************************************************************************** -->{{Product_structure_help}}
{|   class=" tableEdit Product_structure_table" 
 
|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=Phage_lambda_cII
taxon=10710
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..N46a4162a17d52&page=104241&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..N46a4162a17d52-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..N46a4162a17d52-->
{{Product_structure_help}}
{{Product_structure_help}}
<!--Structure_notes--></protect>
</td><td></protect>
==== Structure figures ====
{{File:1ZPQ.pdb}}
{{File:1ZS4.pdb}}
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****        -->
</td><tr><table><!--Structure_notes--></protect>
 
===Notes===
===Notes===
 
See ''Crystal structure of bacteriophage lambda cII and its DNA complex''<ref name='PMID:16039594'/> , [http://www.rcsb.org/pdb/explore/explore.do?structureId=1ZPQ| PDB 1ZPQ (protein alone)], or [http://www.rcsb.org/pdb/explore/explore.do?structureId=1ZS4| PDB 1ZS4 (protein/DNA complex)].


==Gene Product Resources==
==Gene Product Resources==
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79..W46a4162a48469-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..W46a4162a48469-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|class = 'sortable' {{Prettytable}} id='95050'
******************************************************************************************
*
*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit Product_resource_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..W46a4162a48469&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..W46a4162a48469&page=104241&pagename={{FULLPAGENAMEE}}&type=0&template=Product_resource_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..W46a4162a48469-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..W46a4162a48469-->
Line 156: Line 331:
<protect><!--Resources_notes--></protect>
<protect><!--Resources_notes--></protect>
===Notes===
===Notes===


==Accessions in Other Databases==
==Accessions in Other Databases==
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79..I46a4162a7921b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..I46a4162a7921b-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|class = 'sortable' {{Prettytable}} id='95051'
******************************************************************************************
*
*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
 
|
|- class="tableEdit_footer"
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..I46a4162a7921b&page=104241&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein&cmd=&term=NP_040630.1 Genbank:NP_040630.1] 
|
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..I46a4162a7921b&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..I46a4162a7921b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..I46a4162a7921b-->
Line 180: Line 356:


==Links==
==Links==
<!--box uid=421aa90e079fa326b6494f812ad13e79..R46a4162ab2f83-->
{{BacktoTop}}
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--box uid=421aa90e079fa326b6494f812ad13e79..D46b1700d43ad9-->
{|class = 'sortable' {{Prettytable}} id='95052'
<!--
|-
******************************************************************************************
!
*
|-
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
|
*
****************************************************************************************** -->
|-class='sortbottom'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit Links_table" 
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..R46a4162ab2f83&page=&pagename={{FULLPAGENAMEE}} edit table]
|- {{table_heading_style}}
!|Name!!URL!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..D46b1700d43ad9&page=104241&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..R46a4162ab2f83-->
<!--box uid=421aa90e079fa326b6494f812ad13e79..D46b1700d43ad9-->
{{Links_help}}
 
 
 
<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
{{BacktoTop}}
 
[[Category:FtsH substrates]]

Latest revision as of 20:19, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

cII

Synonyms

cII, lambdap59

Product description

activator of Pre and Pi

EC number (for enzymes)


edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0019044

maintenance of viral latency

PMID:9324241[1]

IMP: Inferred from Mutant Phenotype

P

complete

GO:0019043

establishment of viral latency

PMID:12397182[2]

IMP: Inferred from Mutant Phenotype

P

complete

GO:0045893

positive regulation of transcription, DNA-dependent

PMID:2931430[3]

IDA: Inferred from Direct Assay

P

complete

edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MVRANKRNEA LRIESALLNK IAMLGTEKTA EAVGVDKSQI SRWKRDWIPK FSMLLAVLEW
GVVDDDMARL ARQVAAILTN KKRPAATERS EQIQMEF
Length

97

Mol. Wt

11.055 kDa

pI

10.1 (calculated)

Extinction coefficient

16,500 (calc based on 0 Y, 3 W, and 0 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
edit table
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_cII taxon=10710 </beststructure>

Models

View models at:

edit table

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structure figures

See Help:Jmol in EcoliWiki

Biological assembly of cII protein, PDB:1ZPQ
<jmol> <jmolApplet> <color>white</color> <uploadedFileContents >1ZPQ.pdb</uploadedFileContents> <name></name> <script> wireframe off; spacefill off; trace off; rotate ON; cartoon; color chain; </script> </jmolApplet> </jmol>
<jmol> <jmolCheckbox > <scriptWhenChecked > rotate on; </scriptWhenChecked > <scriptWhenUnchecked > rotate off; </scriptWhenUnchecked > <checked>true</checked> <text>rotate</text> </jmolCheckbox > <jmolButton><script>reset; </script><text>reset</text></jmolButton> </jmol>

See Help:Jmol in EcoliWiki

cII Protein/DNA complex: biological function. PDB:1ZS4l
<jmol> <jmolApplet> <color>white</color> <uploadedFileContents >1ZS4.pdb</uploadedFileContents> <name></name> <script> wireframe off; spacefill off; trace off; rotate ON; cartoon; color chain; </script> </jmolApplet> </jmol>
<jmol> <jmolCheckbox > <scriptWhenChecked > rotate on; </scriptWhenChecked > <scriptWhenUnchecked > rotate off; </scriptWhenUnchecked > <checked>true</checked> <text>rotate</text> </jmolCheckbox > <jmolButton><script>reset; </script><text>reset</text></jmolButton> </jmol>








Notes

See Crystal structure of bacteriophage lambda cII and its DNA complex[4] , PDB 1ZPQ (protein alone), or PDB 1ZS4 (protein/DNA complex).

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Obuchowski, M et al. (1997) Stability of CII is a key element in the cold stress response of bacteriophage lambda infection. J. Bacteriol. 179 5987-91 PubMed
  2. ↑ Kobiler, O et al. (2002) The phage lambda CII transcriptional activator carries a C-terminal domain signaling for rapid proteolysis. Proc. Natl. Acad. Sci. U.S.A. 99 14964-9 PubMed
  3. ↑ Ho, YS & Rosenberg, M (1985) Characterization of a third, cII-dependent, coordinately activated promoter on phage lambda involved in lysogenic development. J. Biol. Chem. 260 11838-44 PubMed
  4. ↑ Jain, D et al. (2005) Crystal structure of bacteriophage lambda cII and its DNA complex. Mol. Cell 19 259-69 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Phage_lambda_cII:Gene_Product(s)&oldid=1492032"