ygaM:Expression: Difference between revisions

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Expression

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Reference(s)
Protein	E. coli K-12 MG1655	114	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID:24766808^[1]
Protein	E. coli K-12 MG1655	4734	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID:24766808^[1]
Protein	E. coli K-12 MG1655	202	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID:24766808^[1]
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
ygaM
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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<gbrowseImage> name=NC_000913:2798136..2798176 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b2672 (EcoliWiki Page)	NCBI GEO profiles for ygaM
microarray	GenExpDB:b2672 (EcoliWiki Page)	Summary of data for ygaM from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to ygaM Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G7399	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3297	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b2672
EcoGene	EcoGene:EG13525	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120003966	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0008793	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 Li, GW et al. (2014) Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 157 624-35 PubMed

ygaM:Expression: Difference between revisions

Latest revision as of 18:38, 21 July 2015

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to ygaM Expression

Notes

Links

References

Categories

Navigation menu

@@ Line 1: / Line 1: @@
-#REDIRECT[[ygaM:Expression]]
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+-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
+<noinclude>{{TabsTop}}
+{{Tab|Quickview|ygaM}}{{Tab|Gene|ygaM}}{{Tab|Gene Product(s)|ygaM}}{{Tab On|Expression|ygaM}}{{Tab|Evolution|ygaM}}{{Tab|On One Page|ygaM}}{{TabsBottom}}
+{|
+|-
+|{{Sub}}[[#Overview|Overview]]
+|{{Sub}}[[#Transcription and Transcriptional Regulation|Transcription]]
+|{{Sub}}[[#Translation and Regulation of Translation|Translation]]
+|{{Sub}}[[#Turnover and Regulation of Turnover|Turnover]]
+|{{Sub}}[[#Experimental|Experimental]]
+|{{Sub}}[[#Links| Links]]
+|{{Sub}}[[#References| References]]
+|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
+|}
+</noinclude>
+===Overview===
+{{Expression_overview_placeholder}}
+==Cellular Levels==
+{{BacktoTop}}
+<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.39457.C49c03df3de1ae-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Help Cellular levels}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C49c03df3de1ae"  class=" tableEdit MoleculesPerCellTable"
+|- align='left' bgcolor='#CCCCFF'
+!|Molecule!!Organism or Strain!!Value!!Units!!Experimental Conditions!!Assay used!!Notes!!Reference(s)
+|-
+|
+Protein
+|
+''E. coli'' K-12 MG1655
+|
+|
+molecules/cell/generation
+|
+*Medium: MOPS Complete
+* Temperature (°C):  37
+*Doubling time (min):
+* *Growth phase:
+*OD:
+*other:
+|
+Ribosome Profiling
+|
+|
+PMID: 24766808
+|-
+|
+Protein
+|
+''E. coli'' K-12 MG1655
+|
+|
+molecules/cell/generation
+|
+*Medium: MOPS Minimal
+* Temperature (°C):  37
+*Doubling time (min):
+* *Growth phase:
+*OD:
+*other:
+|
+Ribosome Profiling
+|
+|
+PMID: 24766808
+|-
+|
+Protein
+|
+''E. coli'' K-12 MG1655
+|
+|
+molecules/cell/generation
+|
+*Medium: MOPS Complete without Methionine
+* Temperature (°C):  37
+*Doubling time (min):
+* *Growth phase:
+*OD:
+*other:
+|
+Ribosome Profiling
+|
+|
+PMID: 24766808
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.39457.C49c03df3de1ae&page=39457&pagename={{FULLPAGENAMEE}}&type=0&template=MoleculesPerCellTable edit table]</span> || || || || || || ||
+|}
+<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.39457.C49c03df3de1ae-->
+===Notes===
+==Transcription and Transcriptional Regulation==
+{{BacktoTop}}
+<protect>
+{|{{Prettytable}}
+|-
+|<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.W46ab6b74d3272-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{expression_transcription_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46ab6b74d3272"  class=" tableEdit Expression_operons_table"
+|- {{table heading style}}
+!|Transcription unit(s)
+|-
+|
+[[:Category:Txn_unit:ygaM|ygaM]]
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39457.W46ab6b74d3272&page=39457&pagename={{FULLPAGENAMEE}}&type=&template=Expression_operons_table edit table]</span>
+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.W46ab6b74d3272-->||{{RegulonDBfig|ECK120003967.jpg|YGAM}}
+|}
+<!--Transcription_notes--></protect>
+===Notes===
+{{Expression_transcription_placeholder}}
+==Translation and Regulation of Translation==
+{{BacktoTop}}
+<protect><gbrowseImage>
+name=NC_000913:2798136..2798176
+source=MG1655
+type=Gene+DNA_+Protein
+preset=Nterminus
+</gbrowseImage>
+{{Nterm_closeup}}
+<!--Translation_notes--></protect>
+===Notes===
+{{Expression_translation_placeholder}}
+==Turnover and Regulation of Turnover==
+<!--Turnover_notes--></protect>
+===Notes===
+{{Expression_turnover_placeholder}}
+==Experimental==
+{{BacktoTop}}
+<protect>
+<big>'''Mutations Affecting Expression'''</big>
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.T46ab6b75a3284-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Expression_allele_table_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="T46ab6b75a3284"  class=" tableEdit Expression_allele_table"
+|- {{table_heading_style}}
+!|Allele Name!!Mutation!!Phenotype!!Reference
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39457.T46ab6b75a3284&page=39457&pagename={{FULLPAGENAMEE}}&type=&template=Expression_allele_table edit table]</span> || || ||
+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.T46ab6b75a3284-->
+<big>'''Expression Studies'''</big>
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.R46ab6b761a704-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Expression_studies_table_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46ab6b761a704"  class=" tableEdit Expression_studies_table"
+|- {{table heading style}}
+!|Type!!Reference!!Notes
+|-
+|
+microarray
+|
+[[geoprofiles:b2672|GEO Profiles:b2672]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
+|
+NCBI GEO profiles for ''ygaM''
+|-
+|
+microarray
+|
+[http://genexpdb.ou.edu/index.php?query=b2672 GenExpDB:b2672] ([[EcoliGenExpDB|EcoliWiki Page]])
+|
+Summary of data for ygaM from multiple microarray studies
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39457.R46ab6b761a704&page=39457&pagename={{FULLPAGENAMEE}}&type=&template=Expression_studies_table edit table]</span> || ||
+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.R46ab6b761a704-->
+<big>'''Expression Resources'''</big>
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.H46ab6b7687591-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Expression_resource_table_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46ab6b7687591"  class=" tableEdit Expression_resource_table"
+|- {{table heading style}}
+!|Resource Name!!Resource Type!!Description!!Source!!Notes
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39457.H46ab6b7687591&page=39457&pagename={{FULLPAGENAMEE}}&type=&template=Expression_resource_table edit table]</span> || || || ||
+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.H46ab6b7687591-->
+<protect><!--Expression_experimental_notes--></protect>
+===Notes===
+==Accessions Related to ''ygaM'' Expression==
+{{BacktoTop}}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.Q46ab6b7707b42-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Gene_accessions_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46ab6b7707b42"  class=" tableEdit Gene_accessions_table"
+|- {{table_heading_style}}
+!|Database!!Accession!!Notes
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:G7399
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EchoBASE]]
+|
+EchoBASE:EB3297
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
+|
+[http://chase.ou.edu/macro/searchlink.php?bnum=b2672 EcoliGenExpDB:b2672]
+|
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG13525
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[RegulonDB]]
+|
+RegulonDB:ECK120003966
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0008793
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39457.Q46ab6b7707b42&page=39457&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.Q46ab6b7707b42-->
+<protect><!--Accessions_notes--></protect>
+===Notes===
+==Links==
+{{BacktoTop}}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.S46a7ca4005e47-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46a7ca4005e47"  class=" tableEdit Links_table"
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+!|Name!!URL!!Comments
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+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.39457.S46a7ca4005e47-->
+<noinclude>
+==References==
+{{BacktoTop}}
+{{RefHelp}}
+<references />
+__NOTOC__
+===Categories===
+{{BacktoTop}}
+[[Category:Txn_unit:ygaM]]

ygaM:Expression: Difference between revisions

Latest revision as of 18:38, 21 July 2015

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to ygaM Expression

Notes

Links

References

Categories

Navigation menu

Search