ygaM:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YgaM

Synonyms

predicted protein, B2672, YgaM , AlaE, ECK2666, JW2647, b2672, YgaM

Product description

predicted protein

Function unknown

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yghW

PMID:16606699[1]

Experiment(s):EBI-1143631

Protein

rplQ

PMID:16606699[1]

Experiment(s):EBI-1143631

Protein

rraB

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

ycjF

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

skp

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

rpsR

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

miaB

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

ycaO

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

malT

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

dnaJ

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

ybeZ

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

rfaD

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

rpsM

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

elaB

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

mrdA

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

yqjD

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

phoE

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

rlmN

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

ndh

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

ygdH

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

ygfB

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

opgG

PMID:19402753[2]

LCMS(ID Probability):99.4

Protein

ydaU

PMID:19402753[2]

LCMS(ID Probability):99.6

Protein

ychA

PMID:19402753[2]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGDHMFNRPN RNDVDDGVQD IQNDVNQLAD SLESVLKSWG SDAKGEAEAA RSKAQALLKE
TRARMHGRTR VQQAARDAVG CADSFVRERP WCSVGTAAAV GIFIGALLSM RKS
Length

113

Mol. Wt

12.287 kDa

pI

8.0 (calculated)

Extinction coefficient

11,000 - 11,250 (calc based on 0 Y, 2 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

19..111

PF05957 Bacterial protein of unknown function (DUF883)

PMID:19920124[3]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ygaM taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:49176257

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947157

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008793

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ADQ7

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7399

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13525

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947157

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003966

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3297

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 2.23 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  3. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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