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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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W3110: 1650537..1650755<br /><gbrowseImage>
W3110: 1650537..1650755<br /><gbrowseImage>
name=AC_000091:1650537..1650755
name=NC_007779:1650537..1650755
source=W3110
source=W3110
preset=GeneLocation
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{{GBrowseLink|ecoli_W3110|AC_000091|1649537|1651755|GBrowse(W3110)}}  
{{GBrowseLink|ecoli_W3110|NC_007779|1649537|1651755|GBrowse(W3110)}}  
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|1650537|1650755|FASTA Dump}}  
{{GBrowseFastaLink|ecoli_W3110|NC_007779|1650537|1650755|FASTA Dump}}  


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Resistant to
Sensitivity to
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increases senstivity to bicyclomycin
increases senstivity to bicyclomycin
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!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11302 EcoCyc:EG11302]
EcoCyc:EG11302
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EchoBASE]]
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB1279 EchoBASE:EB1279]
EchoBASE:EB1279
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EcoGene]]
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[http://ecogene.org/geneinfo.php?eg_id=EG11302 EcoGene:EG11302]
EcoGene:EG11302
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[[ASAP]]
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0005255&formSubmitReturn=1 ASAP:ABE-0005255]
ASAP:ABE-0005255
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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Escherichia coli str. K-12 substr. MG1655  
Escherichia coli str. K-12 substr. MG1655  
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[[RegulonDB]]
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RegulonDB:ECK120001275
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 20:28, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ydfC

Mnemonic

Rz protein

Synonyms

ydfC, ECK1567, b1573, JW1565, rzpQ[1][2], ECK1547, JW1545, Rz, ydfP, b1553, JW1565

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

35.49 minutes 

MG1655: 1646847..1647065
<gbrowseImage> name=NC_000913:1646847..1647065 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1611224..1611721
<gbrowseImage> name=NC_012967:1611224..1611721 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1529113..1529610
<gbrowseImage> name=NC_012759:1529113..1529610 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1650537..1650755
<gbrowseImage> name=NC_007779:1650537..1650755 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ydfC::Tn5KAN-I-SceI (FB20370)

Insertion at nt 166 in Plus orientation

PMID:15262929[3]

E. coli Genome Project:FB20371

contains pKD46

ydfC::Tn5KAN-I-SceI (FB20370)

Insertion at nt 166 in Plus orientation

PMID:15262929[3]

E. coli Genome Project:FB20372

does not contain pKD46

ΔrzpQ722::kan

PMID:16738554[4]

CGSC:106338

rzpQ

deletion

Sensitivity to

increases senstivity to bicyclomycin

PMID:21357484[5]

fig 2

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[6]

Status:

Primer 1:

Primer 2:

12E2

Kohara Phage

Genobase

PMID:3038334[7]

7B6

Kohara Phage

Genobase

PMID:3038334[7]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11302

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1279

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1573

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C1407

EcoGene

EcoGene:EG11302

Escherichia coli str. K-12 substr. MG1655

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z6076

ASAP

ASAP:ABE-0005255

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:G6826

Escherichia coli str. K-12 substr. MG1655

EcoGene (EcoliWiki Page)

EcoGene:EG13828

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946101

Escherichia coli str. K-12 substr. MG1655

EcoCyc (EcoliWiki Page)

ECOCYC:EG11302

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946107

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001275

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
  4. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ Tran, L et al. (2011) Single-gene deletion mutants of Escherichia coli with altered sensitivity to bicyclomycin, an inhibitor of transcription termination factor Rho. J. Bacteriol. 193 2229-35 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed

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