Cis Element:Plasmid psi: Difference between revisions

Latest revision as of 08:43, 27 May 2013

Cis element summary table

Standard Name	psi
Synonyms
Function	Plasmid Recombination Site
Location
SO terms
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Notes

Location and Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
pSC101				GGTGCGCGCAA GATCCA TTATGTTAAAC^[1]^[2]
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Notes

Interactions

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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	XerC	could be indirect	PMID:8195072^[2] PMID:8605888^[3]	plasmid stability assays
Protein	XerD	could be indirect	PMID:8195072^[2] PMID:8605888^[3]	plasmid stability assays
Protein	PepA		PMID:8605888^[3]
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Notes

psi can promote intermolecular recombination and replace dif on the chromosome^[2]. The product of recombination at psi is a right-handed antiparallel catenane^[4].

Mutant alleles and phenotypes

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Allele	Nt change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
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Notes

Accessions

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:	Escherichia coli str. K-12 substr. MG1655
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Notes

References

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See Help:References for how to manage references in EcoliWiki.

↑ Kuempel, PL et al. (1991) dif, a recA-independent recombination site in the terminus region of the chromosome of Escherichia coli. New Biol. 3 799-811 PubMed
↑ ^2.0 ^2.1 ^2.2 ^2.3 Cornet, F et al. (1994) Plasmid pSC101 harbors a recombination site, psi, which is able to resolve plasmid multimers and to substitute for the analogous chromosomal Escherichia coli site dif. J. Bacteriol. 176 3188-95 PubMed
↑ ^3.0 ^3.1 ^3.2 Colloms, SD et al. (1996) Xer-mediated site-specific recombination in vitro. EMBO J. 15 1172-81 PubMed
↑ Colloms, SD et al. (1997) Topological selectivity in Xer site-specific recombination. Cell 88 855-64 PubMed

===Categories===

[PMID:1657123-1] Kuempel, PL et al. (1991) dif, a recA-independent recombination site in the terminus region of the chromosome of Escherichia coli. New Biol. 3 799-811 PubMed

[PMID:8195072-2] 2.0 ^2.1 ^2.2 ^2.3 Cornet, F et al. (1994) Plasmid pSC101 harbors a recombination site, psi, which is able to resolve plasmid multimers and to substitute for the analogous chromosomal Escherichia coli site dif. J. Bacteriol. 176 3188-95 PubMed

[PMID:8605888-3] 3.0 ^3.1 ^3.2 Colloms, SD et al. (1996) Xer-mediated site-specific recombination in vitro. EMBO J. 15 1172-81 PubMed

[PMID:9118228-4] Colloms, SD et al. (1997) Topological selectivity in Xer site-specific recombination. Cell 88 855-64 PubMed

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[2]

[3]

[4]

@@ Line 1: / Line 1: @@
 __NOTOC__
 ==Cis element summary table==
-<newTableEdit>Template:Cis_element_summary_table</newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.172211.K4c2a3f7082c5e-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->
+{|   id="K4c2a3f7082c5e"  class=" tableEdit Cis_element_summary_table"
+|-
+!align=left {{table_heading_style}} |Standard Name
+||
+psi
+|-
+!align=left {{table_heading_style}} |Synonyms
+||
+|-
+!align=left {{table_heading_style}} |Function
+||
+Plasmid Recombination Site
+|-
+!align=left {{table_heading_style}} |Location
+||
+|-
+!align=left {{table_heading_style}} |SO terms
+||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172211.K4c2a3f7082c5e&page=172211&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table]</span> ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.172211.K4c2a3f7082c5e--></protect>
 ===Notes===
 == Location and Sequence ==
 {{BacktoTop}}
-<newTableEdit>Template:Gene_location_table</newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.172211.L4c2a3f70840ca-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Gene_location_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L4c2a3f70840ca"  class=" tableEdit Gene_location_table"
+|- {{table_heading_style}}
+!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
+|-
+|
+pSC101
+|
+|
+|
+|
+GGTGCGCGCAA GATCCA TTATGTTAAAC<ref name='PMID:1657123'/><ref name='PMID:8195072'/>
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172211.L4c2a3f70840ca&page=172211&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> || || || ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.172211.L4c2a3f70840ca--></protect>
 ===Notes===
@@ Line 12: / Line 70: @@
 == Interactions==
 {{BacktoTop}}
-<newTableEdit>Template:Product_interactions_table</newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.172211.K4c2a3f7085353-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Product_interactions_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K4c2a3f7085353"  class=" tableEdit Product_interactions_table dataTable"
+|- {{table heading style}}
+!|Partner Type!!Partner!!Notes!!References!!Evidence
+|-
+|
+Protein
+|
+XerC
+|
+could be indirect
+|
+*PMID:8195072
+*PMID:8605888
+|
+plasmid stability assays
+|-
+|
+Protein
+|
+XerD
+|
+could be indirect
+|
+*PMID:8195072
+*PMID:8605888
+|
+plasmid stability assays
+|-
+|
+Protein
+|
+PepA
+|
+|
+PMID:8605888
+|
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172211.K4c2a3f7085353&page=172211&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table]</span> || || || ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.172211.K4c2a3f7085353--></protect>
 ===Notes===
+''psi'' can promote intermolecular recombination and replace ''dif'' on the chromosome<ref name='PMID:8195072'/>. The product of recombination at ''psi'' is a right-handed antiparallel catenane<ref name='PMID:9118228'/>.
 == Mutant alleles and phenotypes ==
 {{BacktoTop}}
-<newTableEdit>Template:Cis_Element_allele_table</newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.172211.G4c2a3f70864e3-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G4c2a3f70864e3"  class=" tableEdit Cis_Element_allele_table"
+|- {{table_heading_style}}
+!|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172211.G4c2a3f70864e3&page=172211&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table]</span> || || || || || ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.172211.G4c2a3f70864e3--></protect>
 ===Notes===
@@ Line 24: / Line 146: @@
 == Genetic Resources ==
 {{BacktoTop}}
-<newTableEdit>Template:Gene resource table </newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.172211.D4c2a3f70877c2-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Gene_resources_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D4c2a3f70877c2"  class=" tableEdit Gene_resource_table"
+|- {{table_heading_style}}
+!|Resource!!Resource Type!!Source!!Notes/Reference
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172211.D4c2a3f70877c2&page=172211&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table]</span> || || ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.172211.D4c2a3f70877c2--></protect>
 ===Notes===
 == Accessions ==
 {{BacktoTop}}
-<newTableEdit>Template:Gene accessions table</newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.172211.B4c2a3f7088851-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Gene_accessions_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B4c2a3f7088851"  class=" tableEdit Gene_accessions_table"
+|- {{table_heading_style}}
+!|Database!!Accession!!Notes
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[RegulonDB]]
+|
+RegulonDB:
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EchoBASE]]
+|
+EchoBASE:
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[ASAP]]
+|
+ASAP:
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.172211.B4c2a3f7088851&page=172211&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.172211.B4c2a3f7088851--></protect>
 ===Notes===
@@ Line 38: / Line 223: @@
 <references/>
-===Categories===
+===Categories===[[Category:Cis_Element]]
+[[Category:Plasmid]]

Cis Element:Plasmid psi: Difference between revisions

Latest revision as of 08:43, 27 May 2013

Cis element summary table

Notes

Location and Sequence

Notes

Interactions

Notes

Mutant alleles and phenotypes

Notes

Genetic Resources

Notes

Accessions

Notes

References

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