Cis Element:Plasmid psi
Cis element summary table
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| Standard Name |
psi |
|---|---|
| Synonyms | |
| Function |
Plasmid Recombination Site |
| Location | |
| SO terms |
|
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Notes
Location and Sequence
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| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
pSC101 |
||||
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Notes
Interactions
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| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
XerC |
could be indirect |
plasmid stability assays | |
|
Protein |
XerD |
could be indirect |
plasmid stability assays | |
|
Protein |
PepA |
| ||
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Notes
psi can promote intermolecular recombination and replace dif on the chromosome[2]. The product of recombination at psi is a right-handed antiparallel catenane[4].
Mutant alleles and phenotypes
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| Allele | Nt change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
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See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
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Notes
Accessions
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
EcoCyc: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EcoGene: |
Escherichia coli str. K-12 substr. MG1655 | |
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
|
ASAP: |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Kuempel, PL et al. (1991) dif, a recA-independent recombination site in the terminus region of the chromosome of Escherichia coli. New Biol. 3 799-811 PubMed
- ↑ 2.0 2.1 2.2 2.3 Cornet, F et al. (1994) Plasmid pSC101 harbors a recombination site, psi, which is able to resolve plasmid multimers and to substitute for the analogous chromosomal Escherichia coli site dif. J. Bacteriol. 176 3188-95 PubMed
- ↑ 3.0 3.1 3.2 Colloms, SD et al. (1996) Xer-mediated site-specific recombination in vitro. EMBO J. 15 1172-81 PubMed
- ↑ Colloms, SD et al. (1997) Topological selectivity in Xer site-specific recombination. Cell 88 855-64 PubMed
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