hns:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
touch QV table
touch
 
(5 intermediate revisions by the same user not shown)
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{| id="N49aee8e9dea5b"  class=" tableEdit New_Quickview_Table"   
{|   id="N49aee8e9dea5b"  class=" tableEdit New_Quickview_Table"   


|-
|-
Line 33: Line 33:
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK1232, b1237, JW1225, bglY, cur, drc, drdX, drs, irk, mssyA, msyA, osmZ, pilG, topX, virR, hnsA, topS, B1, H1''<ref name='LIB:Riley_2006'/>
''ECK1232, b1237, JW1225, bglY, cur, drc, drdX, drs, irk, mssyA, msyA, osmZ, pilG, topX, virR, hnsA, topS, B1, H1''<ref name='LIB:Riley_2006'/>, fimG, H1, verA''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
Line 43: Line 43:
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
global DNA-binding transcriptional dual regulator H-NS<ref name='LIB:Riley_2006'/>, B1237<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Irk<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsyA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TopS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TopX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, VirR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Drs<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Drc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cur<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hns<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DrdX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BglY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HnsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA-binding protein HLP-II (HU, BH2, HD, NS); pleiotropic regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OsmZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA-binding protein HLP-II (HU, BH2, HD, NS)<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
''global DNA-binding transcriptional dual regulator H-NS<ref name='LIB:Riley_2006'/>, B1237<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Irk<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsyA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TopS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TopX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, VirR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Drs<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Drc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cur<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hns<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DrdX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BglY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HnsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA-binding protein HLP-II (HU, BH2, HD, NS); pleiotropic regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OsmZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA-binding protein HLP-II (HU, BH2, HD, NS)<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , B1, bglY, cur, drc, drdX, drs, ECK1232, fimG, H1, hnsA, irk, JW1225, msyA, osmZ, pilG, topS, topX, verA, virR, b1237''
|-
|-
!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
Line 63: Line 63:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://ecoliwiki.net/tools/display_dna.php?gene=hns&loc=MG1655:1292145..1291732,W3110:1294499..1294086,DH10B:1332386..1331973,REL606:1292716..1292303 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1292716&end=1292303&gene=hns&aa=msealkilnnirtlraqarectletleemleklevvvnerreeesaaaaeveertrklqqyremliadgidpnellnslaavksgtkakraqrpakysyvdengetktwtgqgrtpavikkamdeqgkslddflikq Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hns+AND+escherichia+coli Pubmed(hns)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=hns Textpresso(hns)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hns&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10457]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000450&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hns&loc=MG1655%3A1292145..1291732,W3110%3A1294499..1294086,DH10B%3A1332386..1331973,REL606%3A1292716..1292303,BW2952%3A1181230..1181643]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1181230&end=1181643&gene=hns&aa=msealkilnnirtlraqarectletleemleklevvvnerreeesaaaaeveertrklqqyremliadgidpnellnslaavksgtkakraqrpakysyvdengetktwtgqgrtpavikkamdeqgkslddflikq]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hns+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hns]]&nbsp;&nbsp;


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 21:49, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hns

Gene Synonym(s)

ECK1232, b1237, JW1225, bglY, cur, drc, drdX, drs, irk, mssyA, msyA, osmZ, pilG, topX, virR, hnsA, topS, B1, H1[1], fimG, H1, verA

Product Desc.

H-NS transcriptional dual regulator[2][3]

DNA-binding global regulator H-NS; diverse mutant phenotypes affecting transcription, transposition, inversion, cryptic-gene expression; involved in chromosome organization; preferentially binds bent DNA; has N-terminal dimerization domain[4]

Product Synonyms(s)

global DNA-binding transcriptional dual regulator H-NS[1], B1237[2][1], Irk[2][1], MsyA[2][1], PilG[2][1], TopS[2][1], TopX[2][1], VirR[2][1], Drs[2][1], Drc[2][1], Cur[2][1], Hns[2][1], DrdX[2][1], BglY[2][1], HnsA[2][1], DNA-binding protein HLP-II (HU, BH2, HD, NS); pleiotropic regulator[2][1], OsmZ[2][1], DNA-binding protein HLP-II (HU, BH2, HD, NS)[3][1] , B1, bglY, cur, drc, drdX, drs, ECK1232, fimG, H1, hnsA, irk, JW1225, msyA, osmZ, pilG, topS, topX, verA, virR, b1237

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hns[2], OP00190

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


HN-S forms heteromeric complexes with Hha and Cnu, which modulates HN-S function, expression and stability. Mutations affect chromosomal supercoiling. HT_Cmplx32_Mem: CspC+Hns+HupA.[4]



References

[back to top]


  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=hns:Quickview&oldid=1396831"