ompF:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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****************************************************************************************** -->{{Quickview_table_help}}
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{| id="L49aeeebe81dd3"  class=" tableEdit New_Quickview_Table"   
{|   id="L49aeeebe81dd3"  class=" tableEdit New_Quickview_Table"   


|-
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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ompF''  
''ompF''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0920, b0929, JW0912, cmlB, coa, cry, tolF, nfxB?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK0920, b0929, JW0912, cmlB, coa, cry, tolF, nfxB?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, nfxB?''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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outer membrane porin 1a (Ia;b;F)<ref name='LIB:Riley_2006'/>, B0929<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TolF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cry<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Coa<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CmlB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmpF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, outer membrane porin OmpF<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
''outer membrane porin 1a (Ia;b;F)<ref name='LIB:Riley_2006'/>, B0929<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TolF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cry<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Coa<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CmlB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmpF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, outer membrane porin OmpF<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , cmlB, coa, cry, ECK0920, JW0912, nfxB?, tolF, b0929''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ompF&loc=MG1655:986205..985117,W3110:987404..986316,DH10B:1040133..1039045,REL606:1004074..1002986 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1004074&end=1002986&gene=ompF&aa=mmkrnilavivpallvagtanaaeiynkdgnkvdlygkavglhyfskgngensyggngdmtyarlgfkgetqinsdltgygqweynfqgnnsegadaqtgnktrlafaglkyadvgsfdygrnygvvydalgytdmlpefggdtaysddffvgrvggvatyrnsnffglvdglnfavqylgknerdtarrsngdgvggsisyeyegfgivgaygaadrtnlqeaqplgngkkaeqwatglkydanniylaanygetrnatpitnkftntsgfanktqdvllvaqyqfdfglrpsiaytkskakdvegigdvdlvnyfevgatyyfnknmstyvdyiinqidsdnklgvgsddtvavgivyqf Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ompF+AND+escherichia+coli Pubmed(ompF)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ompF Textpresso(ompF)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ompF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10671]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000664&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ompF&loc=MG1655%3A986205..985117,W3110%3A987404..986316,DH10B%3A1040133..1039045,REL606%3A1004074..1002986,BW2952%3A888085..889173]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=888085&end=889173&gene=ompF&aa=mmkrnilavivpallvagtanaaeiynkdgnkvdlygkavglhyfskgngensyggngdmtyarlgfkgetqinsdltgygqweynfqgnnsegadaqtgnktrlafaglkyadvgsfdygrnygvvydalgytdmlpefggdtaysddffvgrvggvatyrnsnffglvdglnfavqylgknerdtarrsngdgvggsisyeyegfgivgaygaadrtnlqeaqplgngkkaeqwatglkydanniylaanygetrnatpitnkftntsgfanktqdvllvaqyqfdfglrpsiaytkskakdvegigdvdlvnyfevgatyyfnknmstyvdyiinqidsdnklgvgsddtvavgivyqf]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ompF+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ompF]]&nbsp;&nbsp;


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Trimeric. T2 receptor. Colicin N receptor and translocator. Translation of OmpF is inhibited by the rseX sRNA. Binds TrxA (Kumar, 2004).<ref name='LIB:EcoGene'/>
Trimeric. T2 receptor. Colicin N receptor and translocator. Translation of OmpF is inhibited by the rseX sRNA. Binds TrxA (Kumar, 2004).<ref name='LIB:EcoGene'/>


Reduced levels of OmpF give multiple antibiotic resistance <ref name='PMID:11601842'/>


<noinclude>


<noinclude>
==References==
==References==
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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ompF

Gene Synonym(s)

ECK0920, b0929, JW0912, cmlB, coa, cry, tolF, nfxB?[1][2], nfxB?

Product Desc.

outer membrane porin OmpF[2]; OmpF[3];

Component of outer membrane porin F[3]; The Colicin A Import System[3]

Outer membrane porin F[4]

Product Synonyms(s)

outer membrane porin 1a (Ia;b;F)[1], B0929[2][1], TolF[2][1], Cry[2][1], Coa[2][1], CmlB[2][1], OmpF[2][1], outer membrane porin OmpF[3][1] , cmlB, coa, cry, ECK0920, JW0912, nfxB?, tolF, b0929

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ompF[2], OP00066

Regulation/Activity
Quick Links



        

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Notes

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Trimeric. T2 receptor. Colicin N receptor and translocator. Translation of OmpF is inhibited by the rseX sRNA. Binds TrxA (Kumar, 2004).[4]

Reduced levels of OmpF give multiple antibiotic resistance [5]


References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Delihas, N & Forst, S (2001) MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factors. J. Mol. Biol. 313 1-12 PubMed
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