atpH:Gene Product(s): Difference between revisions

Standard name	AtpH
Synonyms	F1 sector of membrane-bound ATP synthase, delta subunit^[1], B3735^[2]^[1], Unc^[2]^[1], UncH^[2]^[1], PapE^[2]^[1], AtpH^[2]^[1] , ECK3728, JW3713, papE, uncH, b3735
Product description	ATP synthase, F1 complex, δ subunit^[2]^[3]; Component of ATP synthase, F1 complex^[2]^[3]; ATP synthase^[2]^[3] ATP synthase subunit delta, membrane-bound, F1 sector^[4]
EC number (for enzymes)	3.6.3.14^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005886	plasma membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000711	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020781	C	Seeded from EcoCyc (v14.0)	complete
Contributes to	GO:0046933	hydrogen ion transporting ATP synthase activity, rotational mechanism	PMID:2863270^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	PMID:6294057^[6]	IMP: Inferred from Mutant Phenotype		C	Component of F1 complex, with gene products of uncA (alpha), uncD (beta), uncG (gamma) and uncC (epsilon) - for review see Chap 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0015986	ATP synthesis coupled proton transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000711	P	Seeded from EcoCyc (v14.0)	complete
	GO:0015986	ATP synthesis coupled proton transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020781	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	PMID:16858726^[7]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc (v14.0)	complete
	GO:0019898	extrinsic to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9903	C	Seeded from EcoCyc (v14.0)	complete
	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000711	C	Seeded from EcoCyc (v14.0)	complete
	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0139	C	Seeded from EcoCyc (v14.0)	complete
	GO:0046933	hydrogen ion transporting ATP synthase activity, rotational mechanism	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01416	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046933	hydrogen ion transporting ATP synthase activity, rotational mechanism	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000711	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046933	hydrogen ion transporting ATP synthase activity, rotational mechanism	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020781	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of ATP synthase, F1 complex	could be indirect
Protein	iscS		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	glpC		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	atpA		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	glpD		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	yjjK		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	dnaK		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	atpD		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	tyrR		PMID:19402753^[9]	LCMS(ID Probability):99.4
Protein	Subunits of ATP synthase	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
plasma membrane			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MSEFITVARP YAKAAFDFAV EHQSVERWQD MLAFAAEVTK NEQMAELLSG ALAPETLAES FIAVCGEQLD ENGQNLIRVM AENGRLNALP DVLEQFIHLR AVSEATAEVD VISAAALSEQ QLAKISAAME KRLSRKVKLN CKIDKSVMAG VIIRAGDMVI DGSVRGRLER LADVLQS
Length	177
Mol. Wt	19.331 kDa
pI	5.0 (calculated)
Extinction coefficient	6,990 - 7,240 (calc based on 1 Y, 1 W, and 2 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	7..175	PF00213 ATP synthase delta (OSCP) subunit		PMID:19920124^[10]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=atpH taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131603	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:948254	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0012215	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0ABA4	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10105	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10105	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:948254	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000101	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0103	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Klionsky, DJ & Simoni, RD (1985) Assembly of a functional F1 of the proton-translocating ATPase of Escherichia coli. J. Biol. Chem. 260 11200-6 PubMed
↑ Humbert, R et al. (1983) Escherichia coli mutants defective in the uncH gene. J. Bacteriol. 153 416-22 PubMed
↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
↑ ^8.0 ^8.1 ^8.2 ^8.3 ^8.4 ^8.5 ^8.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

atpH:Gene Product(s): Difference between revisions

Latest revision as of 21:07, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 18: / Line 18: @@
 |{{Sub}}[[#Localization |Localization]]
 |{{Sub}}[[#Sequence|Sequence]]
+|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
 |{{Sub}}[[#Structure|Structure]]
 |{{Sub}}[[#Gene Product Resources|Resources]]
@@ Line 30: / Line 31: @@
 <!--
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-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_nomenclature_help}}
-{|{{Prettytable}}
+{|   id="A46aaffe6dc5ca"  class=" tableEdit Product_nomenclature_table"
 |-
-!{{table heading style}} |Standard name
+!align=left {{table heading style}} |Standard name
-|
+||
-AtpH product
+AtpH
 |-
-!{{table heading style}} |Synonyms
+!align=left {{table heading style}} |Synonyms
-|
+||
-F1 sector of membrane-bound ATP synthase, delta subunit product<ref name='LIB:Riley_2006'/>, B3735 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Unc product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UncH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PapE product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AtpH product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''F1 sector of membrane-bound ATP synthase, delta subunit<ref name='LIB:Riley_2006'/>, B3735<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Unc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UncH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PapE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AtpH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3728, JW3713, papE, uncH, b3735''
 |-
-!{{table heading style}} |Product description
+!align=left {{table heading style}} |Product description
-|
+||
 ATP synthase, F1 complex, &delta; subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
-Component of ; [[:Category:Complex:ATP synthase, F1 complex|ATP synthase, F1 complex]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:ATP synthase|ATP synthase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Component of [[:Category:Complex:ATP synthase, F1 complex|ATP synthase, F1 complex]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:ATP synthase|ATP synthase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+ATP synthase subunit delta, membrane-bound, F1 sector<ref name='LIB:EcoGene'/>
 |-
-!{{table heading style}} |EC number (for enzymes)
+!align=left {{table heading style}} |EC number (for enzymes)
-|
+||
-** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14]<ref name='LIB:Riley_2006'/>
+* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14]<ref name='LIB:Riley_2006'/>
-|-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.A46aaffe6dc5ca&page=28060&pagename={{FULLPAGENAMEE}} edit table]
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.A46aaffe6dc5ca&page=28060&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.A46aaffe6dc5ca-->
-{{Product_nomenclature_help}}
 <protect><!--Nomenclature_notes--></protect>
 ===Notes===
@@ Line 66: / Line 70: @@
 {{BacktoTop}}
 <protect>
-<big>'''Gene Ontology'''</big>
+<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.28060.Y46aaffe922e6f-->
-<!--box uid=421aa90e079fa326b6494f812ad13e79.28060.Y46aaffe922e6f-->
 <!--
 ******************************************************************************************
@@ Line 73: / Line 76: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46aaffe922e6f"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+|-
+|
+|
+GO:0005886
+|
+plasma membrane
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR000711
+|
+C
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0005886
+|
+plasma membrane
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR020781
+|
+C
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+Contributes to
+|
+GO:0046933
+|
+hydrogen ion transporting ATP synthase activity, rotational mechanism
+|
+PMID:2863270
+|
+IDA: Inferred from Direct Assay
+|
+|
+F
+|
+|
+complete
 |-
 |
 |
-[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]
+GO:0005886
 |
-cytoplasm
+plasma membrane
 |
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0997
 |
 C
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
-required fields missing
+complete
 |-
 |
 |
-[[Category:GO:0015986_!_ATP_synthesis_coupled_proton_transport]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0015986_!_ATP_synthesis_coupled_proton_transport GO:0015986]
+GO:0045261
 |
-ATP synthesis coupled proton transport
+proton-transporting ATP synthase complex, catalytic core F(1)
 |
-[[PMID:2863270]]<ref name=PMID:2863270/>
+PMID:6294057
 |
 IMP: Inferred from Mutant Phenotype
 |
+|
+C
+|
+Component of F1 complex, with gene products of uncA (alpha), uncD (beta), uncG (gamma) and uncC (epsilon) - for review see Chap 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.
+|
+complete
+|-
+|
+|
+GO:0005886
+|
+plasma membrane
+|
+GOA:spkw<br />SP_KW:GO_REF:0000004
+|
+IEA: Inferred from Electronic Annotation
+|
+SP_KW:KW-1003
+|
+C
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0015986
+|
+ATP synthesis coupled proton transport
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR000711
 |
 P
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
 |-
 |
 |
-[[Category:GO:0016471_!_vacuolar_proton-transporting_V-type_ATPase_complex]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016471_!_vacuolar_proton-transporting_V-type_ATPase_complex GO:0016471]
+GO:0015986
 |
-vacuolar proton-transporting V-type ATPase complex
+ATP synthesis coupled proton transport
 |
+GOA:interpro<br />GO_REF:0000002
 |
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR020781
 |
-C
+P
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
-required fields missing
+complete
 |-
 |
-Contributes to
 |
-[[Category:GO:0046933_!_hydrogen_ion_transporting_ATP_synthase_activity,_rotational_mechanism]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0046933_!_hydrogen_ion_transporting_ATP_synthase_activity,_rotational_mechanism GO:0046933]
+GO:0016020
 |
-hydrogen ion transporting ATP synthase activity, rotational mechanism
+membrane
 |
-[[PMID:2863270]]<ref name=PMID:2863270/>
+PMID:16858726
 |
 IDA: Inferred from Direct Assay
@@ Line 148: / Line 246: @@
 |
-F
+C
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
 |
+|
+GO:0019898
+|
+extrinsic to membrane
+|
+GO_REF:0000023
+|
+IEA: Inferred from Electronic Annotation
+|
+SP_SL:SL-9903
+|
+C
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 157: / Line 274: @@
 |
-[[Category:GO:0045261_!_proton-transporting_ATP_synthase_complex,_catalytic_core_F(1)]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0045261_!_proton-transporting_ATP_synthase_complex,_catalytic_core_F(1) GO:0045261]
+GO:0045261
 |
 proton-transporting ATP synthase complex, catalytic core F(1)
 |
-[[PMID:6294057]]<ref name=PMID:6294057/>
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR000711
+|
+C
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
-IMP: Inferred from Mutant Phenotype
+complete
+|-
 |
+|
+GO:0045261
+|
+proton-transporting ATP synthase complex, catalytic core F(1)
+|
+GOA:spkw<br />SP_KW:GO_REF:0000004
+|
+IEA: Inferred from Electronic Annotation
+|
+SP_KW:KW-0139
 |
 C
 |
-Component of F1 complex, with gene products of uncA (alpha), uncD (beta), uncG (gamma) and uncC (epsilon) - for review see Chap 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0046933
+|
+hydrogen ion transporting ATP synthase activity, rotational mechanism
+|
+GOA:hamap<br />GO_REF:0000020
+|
+IEA: Inferred from Electronic Annotation
+|
+HAMAP:MF_01416
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0046933
+|
+hydrogen ion transporting ATP synthase activity, rotational mechanism
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR000711
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0046933
+|
+hydrogen ion transporting ATP synthase activity, rotational mechanism
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR020781
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.Y46aaffe922e6f&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.Y46aaffe922e6f&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.Y46aaffe922e6f-->
-{{Product_GO_help}}
 <span id="Interactions"></span><big>'''Interactions'''</big>
@@ Line 183: / Line 375: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' {{Prettytable}} id='178808'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46aafffc01f46"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
-!Partner Type!!Partner!!Notes
+!|Partner Type!!Partner!!Notes!!References!!Evidence
 |-
 |
 Protein
@@ Line 196: / Line 388: @@
 Subunits of [[:Category:Complex:ATP synthase, F1 complex|ATP synthase, F1 complex]]
 |
 could be indirect
-|-
+|
+|
+|-
+|
+Protein
+|
+iscS<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146620<br />
+|-
+|
+Protein
+|
+glpC<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146620<br />
+|-
+|
+Protein
+|
+atpA<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146620<br />
+|-
+|
+Protein
+|
+glpD<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146620<br />
+|-
+|
+Protein
+|
+yjjK<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146620<br />
+|-
+|
+Protein
+|
+dnaK<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146620<br />
+|-
+|
+Protein
+|
+atpD<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146620<br />
+|-
+|
+Protein
+|
+tyrR
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.4
+|-
 |
 Protein
@@ Line 203: / Line 487: @@
 Subunits of [[:Category:Complex:ATP synthase|ATP synthase]]
 |
 could be indirect
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.M46aafffc01f46&page=28060&pagename={{FULLPAGENAMEE}} edit table] || ||
+|
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.M46aafffc01f46&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.M46aafffc01f46-->
-{{Product_interactions_help}}
 <!--Function_notes--></protect>
 ===Notes===
@@ Line 217: / Line 506: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' {{Prettytable}} id='178809'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46aafffdd4c46"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |-
 |
 plasma membrane
@@ Line 232: / Line 521: @@
 |
 From EcoCyc<ref name='LIB:EcoCyc11.1'/>
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.Q46aafffdd4c46&page=28060&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.Q46aafffdd4c46&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.Q46aafffdd4c46-->
-{{Product_localization_help}}
 <protect><!--Localization_notes--></protect>
@@ Line 250: / Line 542: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_physical_properties_help}}
-{|{{Prettytable}}
+{|   id="U46ab000045f4c"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
-!{{table heading style}} |Sequence
+!align=left {{table heading style}} |Sequence
-|
+||
 [http://biocyc.org/ECOLI/sequence-aa?object=ATPH-MONOMER at EcoCyc]
 <pre>MSEFITVARP YAKAAFDFAV EHQSVERWQD MLAFAAEVTK NEQMAELLSG ALAPETLAES
@@ Line 263: / Line 560: @@
 QLAKISAAME KRLSRKVKLN CKIDKSVMAG VIIRAGDMVI DGSVRGRLER LADVLQS</pre>
 |-
-!{{table heading style}} |Mol. Wt
+!align=left {{table heading style}} |Length
-|
+||
-.33 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table heading style}} |pI
+!align=left {{table heading style}} |Mol. Wt
-|
+||
-.11<ref name='LIB:EcoCyc10.6'/>
+.331 kDa
 |-
-!{{table heading style}} |Extinction coefficient
+!align=left {{table heading style}} |pI
-|
+||
-- 7240 (calc based on 1 Y, 1 W, and 2 C residues)
+.0 (calculated)
 |-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.U46ab000045f4c&page=28060&pagename={{FULLPAGENAMEE}} edit table]
+!align=left {{table heading style}} |Extinction coefficient
+||
+,990 - 7,240 (calc based on 1 Y, 1 W, and 2 C residues)
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.U46ab000045f4c&page=28060&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.U46ab000045f4c-->
-{{Product_physical_properties_help}}
-<big>'''Domains/Motifs/Modification Sites'''</big>
-<!--box uid=421aa90e079fa326b6494f812ad13e79.28060.B46ab0000c031a-->
+<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
+<tr align="left" valign="top">
+<td><!--box uid=421aa90e079fa326b6494f812ad13e79.28060.B46ab0000c031a-->
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' {{Prettytable}} id='178811'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46ab0000c031a"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
-|-class='sortbottom'
+|-
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.B46ab0000c031a&page=28060&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|
+Domain
+|
+..175
+|
+[http://pfam.janelia.org/family/PF00213 PF00213  ATP synthase delta (OSCP) subunit]
+|
+|
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.B46ab0000c031a&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79.28060.B46ab0000c031a-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.28060.B46ab0000c031a--></td>
-{{Product_domains_motifs_help}}
+<td>
+<!-- motifs column 2-->
+<motif_map/>
+</td>
+</tr>
+</table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.H46ab00012fad0-->
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_structure_help}}
-{|class = 'sortable' {{Prettytable}} id='178812'
+{|   id="H46ab00012fad0"  class=" tableEdit Product_structure_table"
-|- {{table heading style}}
-!Structure Type!!Organism!!Accession!!Residues covered!!Notes
+|-
+!align=left {{table heading style}} |Structures
+||
+<beststructure>
+gene=atpH
+taxon=562,83333
+</beststructure>
 |-
-|
+!align=left {{table heading style}} |Models
-NMR, MINIMIZED AVERAGE STRUCTURE
+||
+View models at:
-|
+* [http://www.proteinmodelportal.org/query/uniprot/P0ABA4 Protein Model Portal]
-Escherichia coli
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0ABA4 PSI-PRED (P0ABA4)]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0ABA4 Genomes TO Protein (P0ABA4)] (GTOP)
-|
-[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1ABV 1ABV] N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE
+|- class="tableEdit_footer"
-|
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.H46ab00012fad0&page=28060&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
-|
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.H46ab00012fad0&page=28060&pagename={{FULLPAGENAMEE}} edit table] || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.H46ab00012fad0-->
-{{Product_structure_help}}
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 335: / Line 679: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' {{Prettytable}} id='178813'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46ab00022260a"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
-!Resource type!!Source!!Notes/Reference
+!|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.H46ab00022260a&page=28060&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.H46ab00022260a&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.H46ab00022260a-->
-{{Product_resources_help}}
 <protect><!--Resources_notes--></protect>
 ===Notes===
@@ Line 356: / Line 701: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' {{Prettytable}} id='178814'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46ab00028c38b"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
-!Database!!Accession!!Notes
+!|Database!!Accession!!Notes
 |-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16131603 GI:16131603]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_418191.1 GeneID:948254]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0012215
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=ATPH-MONOMER EcoCyc:ATPH-MONOMER]
+[http://www.uniprot.org/uniprot/P0ABA4 UniProtKB/Swiss-Prot:P0ABA4]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoCyc]]
 |
-[http://www.expasy.ch/cgi-bin/sprot-search-ac?P0ABA4 UniProt:P0ABA4]
+EcoCyc:EG10105
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[EcoGene]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF00213 PFAM:PF00213]
+EcoGene:EG10105
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_418191 RefSeq:NP_418191]
+[http://www.ncbi.nlm.nih.gov/gene?term=948254 GeneID:948254]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P0ABA4 ModBase:P0ABA4]
+RegulonDB:ECK120000101
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1ABV PDB:1ABV]
+EchoBASE:EB0103
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.U46ab00028c38b&page=28060&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.U46ab00028c38b&page=28060&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.U46ab00028c38b-->
-{{Product_accessions_help}}
 <protect><!--Accessions_notes--></protect>
 ===Notes===
@@ Line 419: / Line 786: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
 ****************************************************************************************** -->
-{|class = 'sortable' {{Prettytable}} id='119298'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a88b3a9fb7e"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
-!Name!!URL!!Comments
+!|Name!!URL!!Comments
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.L46a88b3a9fb7e&page=28060&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.L46a88b3a9fb7e&page=28060&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.L46a88b3a9fb7e-->
-{{Links_help}}
@@ Line 438: / Line 806: @@
 {{BacktoTop}}
 {{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0015986_!_ATP synthesis coupled proton transport]][[Category:GO:0016471_!_vacuolar proton-transporting V-type ATPase complex]][[Category:Complex:ATP synthase, F1 complex]][[Category:Complex:ATP synthase]][[Category:Location:cytoplasm]][[Category:Location:plasma membrane]][[Category:Products with structures in PDB]]
+[[Category:RefGenome_Annotated_Gene]]

atpH:Gene Product(s): Difference between revisions

Latest revision as of 21:07, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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