ade:Gene Product(s): Difference between revisions

Standard name	Ade
Synonyms	cryptic adenine deaminase^[1], B3665^[2]^[1], Adu^[2]^[1], Ade^[2]^[1], YicP^[2]^[1] , adeC, adu, ECK3656, JW3640, yicP, b3665
Product description	cryptic adenine deaminase^[2]^[3]; Component of cryptic adenine deaminase^[3] Cryptic (or inducer-unknown) adenine deaminase; can be activated by hns mutation or IS elements; adenine aminohydrolase^[4]
EC number (for enzymes)	3.5.4.2^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	Missing: evidence, reference
	GO:0000034	adenine deaminase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01518	F	Seeded from EcoCyc (v14.0)	complete
	GO:0000034	adenine deaminase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006679	F	Seeded from EcoCyc (v14.0)	complete
	GO:0000034	adenine deaminase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:3.5.4.2	F	Seeded from EcoCyc (v14.0)	complete
	GO:0006146	adenine catabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006679	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016787	hydrolase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006680	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016787	hydrolase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR011059	F	Seeded from EcoCyc (v14.0)	complete
	GO:0030145	manganese ion binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0464	F	Seeded from EcoCyc (v14.0)	complete
	GO:0000034	adenine deaminase activity	PMID:11440125^[5]	IMP: Inferred from Mutant Phenotype		F		complete
	GO:0005625	soluble fraction	PMID:11440125^[5]	IDA: Inferred from Direct Assay		C		complete
	GO:0006146	adenine catabolic process	PMID:11440125^[5]	IMP: Inferred from Mutant Phenotype		P		complete
	GO:0042803	protein homodimerization activity	PMID:11440125^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0030145	manganese ion binding	PMID:11440125^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0046101	hypoxanthine biosynthetic process	PMID:11440125^[5]	IMP: Inferred from Mutant Phenotype		P		complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of cryptic adenine deaminase	could be indirect
Protein	nadE		PMID:16606699^[6]	Experiment(s):EBI-1146450
Protein	nagC		PMID:16606699^[6]	Experiment(s):EBI-1146450
Protein	rimJ		PMID:16606699^[6]	Experiment(s):EBI-1146450
Protein	rplB		PMID:16606699^[6]	Experiment(s):EBI-1146450
Protein	yfaS		PMID:16606699^[6]	Experiment(s):EBI-1146450
Protein	rpoB		PMID:16606699^[6]	Experiment(s):EBI-1146450
Protein	ymfD		PMID:16606699^[6]	Experiment(s):EBI-1146450
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MNNSINHKFH HISRAEYQEL LAVSRGDAVA DYIIDNVSIL DLINGGEISG PIVIKGRYIA GVGAEYTDAP ALQRIDARGA TAVPGFIDAH LHIESSMMTP VTFETATLPR GLTTVICDPH EIVNVMGEAG FAWFARCAEQ ARQNQYLQVS SCVPALEGCD VNGASFTLEQ MLAWRDHPQV TGLAEMMDYP GVISGQNALL DKLDAFRHLT LDGHCPGLGG KELNAYITAG IENCHESYQL EEGRRKLQLG MSLMIREGSA ARNLNALAPL INEFNSPQCM LCTDDRNPWE IAHEGHIDAL IRRLIEQHNV PLHVAYRVAS WSTARHFGLN HLGLLAPGKQ ADIVLLSDAR KVTVQQVLVK GEPIDAQTLQ AEESARLAQS APPYGNTIAR QPVSASDFAL QFTPGKRYRV IDVIHNELIT HSHSSVYSEN GFDRDDVSFI AVLERYGQRL APACGLLGGF GLNEGALAAT VSHDSHNIVV IGRSAEEMAL AVNQVIQDGG GLCVVRNGQV QSHLPLPIAG LMSTDTAQSL AEQIDALKAA ARECGPLPDE PFIQMAFLSL PVIPALKLTS QGLFDGEKFA FTTLEVTE
Length	588
Mol. Wt	63.739 kDa
pI	5.2 (calculated)
Extinction coefficient	41,370 - 42,745 (calc based on 13 Y, 4 W, and 11 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	81..347	PF01979 Amidohydrolase family		PMID:19920124^[7]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ade taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131535	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:948210	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0011979	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P31441	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11692	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11692	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:948210	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001635	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1643	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 ^5.3 ^5.4 ^5.5 Matsui, H et al. (2001) Adenine deaminase activity of the yicP gene product of Escherichia coli. Biosci. Biotechnol. Biochem. 65 1112-8 PubMed
↑ ^6.0 ^6.1 ^6.2 ^6.3 ^6.4 ^6.5 ^6.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

ade:Gene Product(s): Difference between revisions

Latest revision as of 21:06, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 18: / Line 18: @@
 |{{Sub}}[[#Localization |Localization]]
 |{{Sub}}[[#Sequence|Sequence]]
+|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
 |{{Sub}}[[#Structure|Structure]]
 |{{Sub}}[[#Gene Product Resources|Resources]]
@@ Line 30: / Line 31: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_nomenclature_help}}
-{|{{Prettytable}}
+{|   id="W46aafa333b159"  class=" tableEdit Product_nomenclature_table"
 |-
-!{{table heading style}} |Standard name
+!align=left {{table heading style}} |Standard name
-|
+||
-Ade product
+Ade
 |-
-!{{table heading style}} |Synonyms
+!align=left {{table heading style}} |Synonyms
-|
+||
-cryptic adenine deaminase product<ref name='LIB:Riley_2006'/>, B3665 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Adu product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ade product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YicP product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''cryptic adenine deaminase<ref name='LIB:Riley_2006'/>, B3665<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Adu<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ade<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YicP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , adeC, adu, ECK3656, JW3640, yicP, b3665''
 |-
-!{{table heading style}} |Product description
+!align=left {{table heading style}} |Product description
-|
+||
-cryptic adenine deaminase monomer<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
+cryptic adenine deaminase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
-Component of ; [[:Category:Complex:cryptic adenine deaminase|cryptic adenine deaminase]]<ref name='LIB:EcoCyc11.1'/>
+Component of [[:Category:Complex:cryptic adenine deaminase|cryptic adenine deaminase]]<ref name='LIB:EcoCyc11.1'/>
+Cryptic (or inducer-unknown) adenine deaminase; can be activated by hns mutation or IS elements; adenine aminohydrolase<ref name='LIB:EcoGene'/>
 |-
-!{{table heading style}} |EC number (for enzymes)
+!align=left {{table heading style}} |EC number (for enzymes)
-|
+||
-** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.2 3.5.4.2]<ref name='LIB:Riley_2006'/>
+* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.2 3.5.4.2]<ref name='LIB:Riley_2006'/>
-|-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.W46aafa333b159&page=27903&pagename={{FULLPAGENAMEE}} edit table]
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.W46aafa333b159&page=27903&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27903.W46aafa333b159-->
-{{Product_nomenclature_help}}
 <protect><!--Nomenclature_notes--></protect>
 ===Notes===
@@ Line 66: / Line 70: @@
 {{BacktoTop}}
 <protect>
-<big>'''Gene Ontology'''</big>
+<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.27903.U46aafa3515b9e-->
-<!--box uid=421aa90e079fa326b6494f812ad13e79.27903.U46aafa3515b9e-->
 <!--
 ******************************************************************************************
@@ Line 73: / Line 76: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46aafa3515b9e"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+|-
+|
+|
+GO:0005737
+|
+cytoplasm
+|
+|
+|
+|
+C
+|
+Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.
+|
+Missing: evidence, reference
 |-
 |
 |
-[[Category:GO:0000034_!_adenine_deaminase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0000034_!_adenine_deaminase_activity GO:0000034]
+GO:0000034
 |
-adenine_deaminase_activity
+adenine deaminase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000020 GO_REF:0000020]<br />
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
@@ Line 93: / Line 115: @@
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0000034
+|
+adenine deaminase activity
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR006679
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
+|-
+|
+|
+GO:0000034
+|
+adenine deaminase activity
+|
+GOA:spec<br />GO_REF:0000003
+|
+IEA: Inferred from Electronic Annotation
+|
+EC:3.5.4.2
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
 |-
 |
 |
-[[Category:GO:0000034_!_adenine_deaminase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0000034_!_adenine_deaminase_activity GO:0000034]
+GO:0006146
 |
-adenine_deaminase_activity
+adenine catabolic process
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
 InterPro:IPR006679
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0016787
+|
+hydrolase activity
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR006680
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
 |-
 |
 |
-[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]
+GO:0016787
 |
-cytoplasm
+hydrolase activity
 |
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0378
 |
-C
+F
 |
-Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
-required fields missing
+complete
 |-
 |
 |
-[[Category:GO:0008152_!_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008152_!_metabolic_process GO:0008152]
+GO:0016810
 |
-metabolic process
+hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
 |
+GOA:interpro<br />GO_REF:0000002
 |
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR011059
 |
-P
+F
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
-required fields missing
+complete
 |-
 |
 |
-[[Category:GO:0000034_!_adenine_deaminase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0000034_!_adenine_deaminase_activity GO:0000034]
+GO:0030145
 |
-adenine_deaminase_activity
+manganese ion binding
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000003 GO_REF:0000003]<br />
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-EC:3.5.4.2
+SP_KW:KW-0464
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0000034
+|
+adenine deaminase activity
+|
+PMID:11440125
+|
+IMP: Inferred from Mutant Phenotype
+|
+|
+F
+|
+|
+complete
+|-
+|
+|
+GO:0005625
+|
+soluble fraction
+|
+PMID:11440125
+|
+IDA: Inferred from Direct Assay
+|
+|
+C
+|
+|
+complete
+|-
+|
+|
+GO:0006146
+|
+adenine catabolic process
+|
+PMID:11440125
+|
+IMP: Inferred from Mutant Phenotype
+|
+|
+P
+|
+|
+complete
+|-
+|
+|
+GO:0042803
+|
+protein homodimerization activity
+|
+PMID:11440125
+|
+IDA: Inferred from Direct Assay
+|
+|
+F
+|
+|
+complete
+|-
+|
+|
+GO:0030145
+|
+manganese ion binding
+|
+PMID:11440125
+|
+IDA: Inferred from Direct Assay
+|
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+|
+complete
+|-
 |
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.U46aafa3515b9e&page=27903&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
+GO:0046101
+|
+hypoxanthine biosynthetic process
+|
+PMID:11440125
+|
+IMP: Inferred from Mutant Phenotype
+|
+|
+P
+|
+|
+complete
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.U46aafa3515b9e&page=27903&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27903.U46aafa3515b9e-->
-{{Product_GO_help}}
 <span id="Interactions"></span><big>'''Interactions'''</big>
@@ Line 183: / Line 375: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' {{Prettytable}} id='178278'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46aafa3e2c184"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
-!Partner Type!!Partner!!Notes
+!|Partner Type!!Partner!!Notes!!References!!Evidence
 |-
 |
 Protein
@@ Line 196: / Line 388: @@
 Subunits of [[:Category:Complex:cryptic adenine deaminase|cryptic adenine deaminase]]
 |
 could be indirect
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.G46aafa3e2c184&page=27903&pagename={{FULLPAGENAMEE}} edit table] || ||
+|
+|-
+|
+Protein
+|
+nadE<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146450<br />
+|-
+|
+Protein
+|
+nagC<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146450<br />
+|-
+|
+Protein
+|
+rimJ<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146450<br />
+|-
+|
+Protein
+|
+rplB<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146450<br />
+|-
+|
+Protein
+|
+yfaS<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146450<br />
+|-
+|
+Protein
+|
+rpoB<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146450<br />
+|-
+|
+Protein
+|
+ymfD<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1146450<br />
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.G46aafa3e2c184&page=27903&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27903.G46aafa3e2c184-->
-{{Product_interactions_help}}
 <!--Function_notes--></protect>
 ===Notes===
@@ Line 210: / Line 484: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' {{Prettytable}} id='119117'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46a886ae19e15"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.W46a886ae19e15&page=27903&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.W46a886ae19e15&page=27903&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27903.W46a886ae19e15-->
-{{Product_localization_help}}
 <protect><!--Localization_notes--></protect>
@@ Line 234: / Line 509: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_physical_properties_help}}
-{|{{Prettytable}}
+{|   id="F46aafa40cd30b"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
-!{{table heading style}} |Sequence
+!align=left {{table heading style}} |Sequence
-|
+||
 [http://biocyc.org/ECOLI/sequence-aa?object=EG11692-MONOMER at EcoCyc]
 <pre>MNNSINHKFH HISRAEYQEL LAVSRGDAVA DYIIDNVSIL DLINGGEISG PIVIKGRYIA
@@ Line 254: / Line 534: @@
 ARECGPLPDE PFIQMAFLSL PVIPALKLTS QGLFDGEKFA FTTLEVTE</pre>
 |-
-!{{table heading style}} |Mol. Wt
+!align=left {{table heading style}} |Length
-|
+||
-.74 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table heading style}} |pI
+!align=left {{table heading style}} |Mol. Wt
-|
+||
+.739 kDa
 |-
-!{{table heading style}} |Extinction coefficient
+!align=left {{table heading style}} |pI
-|
+||
-- 42745 (calc based on 13 Y, 4 W, and 11 C residues)
+.2 (calculated)
 |-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.F46aafa40cd30b&page=27903&pagename={{FULLPAGENAMEE}} edit table]
+!align=left {{table heading style}} |Extinction coefficient
+||
+,370 - 42,745 (calc based on 13 Y, 4 W, and 11 C residues)
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.F46aafa40cd30b&page=27903&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27903.F46aafa40cd30b-->
-{{Product_physical_properties_help}}
-<big>'''Domains/Motifs/Modification Sites'''</big>
-<!--box uid=421aa90e079fa326b6494f812ad13e79.27903.Q46aafa414dc91-->
+<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
+<tr align="left" valign="top">
+<td><!--box uid=421aa90e079fa326b6494f812ad13e79.27903.Q46aafa414dc91-->
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' {{Prettytable}} id='178280'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46aafa414dc91"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
-|-class='sortbottom'
+|-
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.Q46aafa414dc91&page=27903&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|
+Domain
+|
+..347
+|
+[http://pfam.janelia.org/family/PF01979 PF01979  Amidohydrolase family]
+|
+|
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.Q46aafa414dc91&page=27903&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79.27903.Q46aafa414dc91-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.27903.Q46aafa414dc91--></td>
-{{Product_domains_motifs_help}}
+<td>
+<!-- motifs column 2-->
+<motif_map/>
+</td>
+</tr>
+</table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27903.R46a886afb21dd-->
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_structure_help}}
-{|class = 'sortable' {{Prettytable}} id='119118'
+{|   id="R46a886afb21dd"  class=" tableEdit Product_structure_table"
-|- {{table heading style}}
-!Structure Type!!Organism!!Accession!!Residues covered!!Notes
+|-
-|-class='sortbottom'
+!align=left {{table heading style}} |Structures
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.R46a886afb21dd&page=27903&pagename={{FULLPAGENAMEE}} edit table] || || || ||
+||
+<beststructure>
+gene=ade
+taxon=562,83333
+</beststructure>
+|-
+!align=left {{table heading style}} |Models
+||
+View models at:
+* [http://www.proteinmodelportal.org/query/uniprot/P31441 Protein Model Portal]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P31441 PSI-PRED (P31441)]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P31441 Genomes TO Protein (P31441)] (GTOP)
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.R46a886afb21dd&page=27903&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27903.R46a886afb21dd-->
-{{Product_structure_help}}
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 313: / Line 653: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' {{Prettytable}} id='178281'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46aafa42205b3"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
-!Resource type!!Source!!Notes/Reference
+!|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.G46aafa42205b3&page=27903&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.G46aafa42205b3&page=27903&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27903.G46aafa42205b3-->
-{{Product_resources_help}}
 <protect><!--Resources_notes--></protect>
 ===Notes===
@@ Line 334: / Line 675: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' {{Prettytable}} id='178282'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46aafa4285160"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
-!Database!!Accession!!Notes
+!|Database!!Accession!!Notes
 |-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16131535 GI:16131535]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_418121.1 GeneID:948210]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0011979
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P31441 UniProtKB/Swiss-Prot:P31441]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[[EcoCyc]]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11692-MONOMER EcoCyc:EG11692-MONOMER]
+EcoCyc:EG11692
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoGene]]
 |
-[[uniprot:P31441|UniProt:P31441]]
+EcoGene:EG11692
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://pfam.sanger.ac.uk/family?acc=PF01979 PFAM:PF01979]
+[http://www.ncbi.nlm.nih.gov/gene?term=948210 GeneID:948210]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_418121 RefSeq:NP_418121]
+RegulonDB:ECK120001635
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P31441 ModBase:P31441]
+EchoBASE:EB1643
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.C46aafa4285160&page=27903&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.C46aafa4285160&page=27903&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27903.C46aafa4285160-->
-{{Product_accessions_help}}
 <protect><!--Accessions_notes--></protect>
 ===Notes===
@@ Line 390: / Line 760: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
 ****************************************************************************************** -->
-{|class = 'sortable' {{Prettytable}} id='119119'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46a886b33d3db"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
-!Name!!URL!!Comments
+!|Name!!URL!!Comments
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.E46a886b33d3db&page=27903&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.27903.E46a886b33d3db&page=27903&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.27903.E46a886b33d3db-->
-{{Links_help}}
@@ Line 409: / Line 780: @@
 {{BacktoTop}}
 {{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0008152_!_metabolic process]][[Category:Complex:cryptic adenine deaminase]]

ade:Gene Product(s): Difference between revisions

Latest revision as of 21:06, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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