rng:Gene Product(s): Difference between revisions

Standard name	Rng
Synonyms	ribonuclease G^[1], B3247^[2]^[1], AdhR^[2]^[1], Rng^[2]^[1], YhdF^[2]^[1], CafA^[2]^[1] , adhR, cafA, ECK3235, JW3216, yhdF, b3247
Product description	ribonuclease G (RNAse G)^[2]^[3]; Component of ribonuclease G (RNAse G)^[3] Endoribonuclease G involved in 16S rRNA processing; division and growth, overexpression forms minicells and chains with long axial structures^[4]
EC number (for enzymes)	3.1.4^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003723	RNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003029	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004519	endonuclease activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0255	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004659	C	Seeded from EcoCyc (v14.0)	complete
	GO:0008996	ribonuclease G activity	PMID:10722715^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0005737	cytoplasm	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0963	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006364	rRNA processing	PMID:10362534^[6]	IMP: Inferred from Mutant Phenotype		P		complete
	GO:0005856	cytoskeleton	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0206	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005856	cytoskeleton	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0090	C	Seeded from EcoCyc (v14.0)	complete
	GO:0007049	cell cycle	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0131	P	Seeded from EcoCyc (v14.0)	complete
	GO:0051301	cell division	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0132	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of ribonuclease G (RNAse G)	could be indirect
Protein	rpsD		PMID:15690043^[7]	Experiment(s):EBI-890107
Protein	rplB		PMID:16606699^[8]	Experiment(s):EBI-1145286
Protein	rpsI		PMID:16606699^[8]	Experiment(s):EBI-1145286
Protein	rpsC		PMID:16606699^[8]	Experiment(s):EBI-1145286
Protein	rpsB		PMID:16606699^[8]	Experiment(s):EBI-1145286
Protein	rplQ		PMID:16606699^[8]	Experiment(s):EBI-1145286
Protein	racC		PMID:16606699^[8]	Experiment(s):EBI-1145286
Protein	dnaK		PMID:15690043^[7]	Experiment(s):EBI-895082
Protein	eno		PMID:15690043^[7]	Experiment(s):EBI-895082
Protein	rpe		PMID:15690043^[7]	Experiment(s):EBI-895082
Protein	rpsE		PMID:15690043^[7]	Experiment(s):EBI-895082
Protein	rpsI		PMID:15690043^[7]	Experiment(s):EBI-895082
Protein	rpsM		PMID:15690043^[7]	Experiment(s):EBI-895082
Protein	rpsO		PMID:15690043^[7]	Experiment(s):EBI-895082
Protein	rpsS		PMID:15690043^[7]	Experiment(s):EBI-895082
Protein	rpsT		PMID:15690043^[7]	Experiment(s):EBI-895082
Protein	rpsU		PMID:15690043^[7]	Experiment(s):EBI-895082
Protein	rpsT		PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	rpsU		PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	rpe		PMID:19402753^[9]	LCMS(ID Probability):99.2
Protein	rpsS		PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	eno		PMID:19402753^[9]	LCMS(ID Probability):99.6
Protein	rpsM		PMID:19402753^[9]	LCMS(ID Probability):99.6
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
cytoplasm			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MRKGINMTAE LLVNVTPSET RVAYIDGGIL QEIHIEREAR RGIVGNIYKG RVSRVLPGMQ AAFVDIGLDK AAFLHASDIM PHTECVAGEE QKQFTVRDIS ELVRQGQDLM VQVVKDPLGT KGARLTTDIT LPSRYLVFMP GASHVGVSQR IESESERERL KKVVAEYCDE QGGFIIRTAA EGVGEAELAS DAAYLKRVWT KVMERKKRPQ TRYQLYGELA LAQRVLRDFA DAELDRIRVD SRLTYEALLE FTSEYIPEMT SKLEHYTGRQ PIFDLFDVEN EIQRALERKV ELKSGGYLII DQTEAMTTVD INTGAFVGHR NLDDTIFNTN IEATQAIARQ LRLRNLGGII IIDFIDMNNE DHRRRVLHSL EQALSKDRVK TSVNGFSALG LVEMTRKRTR ESIEHVLCNE CPTCHGRGTV KTVETVCYEI MREIVRVHHA YDSDRFLVYA SPAVAEALKG EESHSLAEVE IFVGKQVKVQ IEPLYNQEQF DVVMM
Length	495
Mol. Wt	56.063 kDa
pI	6.0 (calculated)
Extinction coefficient	27,850 - 28,600 (calc based on 15 Y, 1 W, and 6 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P0A9J0
Domain	35..122	PF00575 S1 RNA binding domain		PMID:19920124^[10]
Domain	124..394	PF10150 Ribonuclease E/G family		PMID:19920124^[10]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rng taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:90111563	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947744	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0010651	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A9J0	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11299	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11299	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947744	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001272	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1276	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Tock, MR et al. (2000) The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity. J. Biol. Chem. 275 8726-32 PubMed
↑ Wachi, M et al. (1999) Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5' end of 16S rRNA. Biochem. Biophys. Res. Commun. 259 483-8 PubMed
↑ ^7.00 ^7.01 ^7.02 ^7.03 ^7.04 ^7.05 ^7.06 ^7.07 ^7.08 ^7.09 ^7.10 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
↑ ^8.0 ^8.1 ^8.2 ^8.3 ^8.4 ^8.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ ^9.0 ^9.1 ^9.2 ^9.3 ^9.4 ^9.5 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ ^10.0 ^10.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

rng:Gene Product(s): Difference between revisions

Latest revision as of 21:01, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="E46aadb6b34e67"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-ribonuclease G<ref name='LIB:Riley_2006'/>, B3247<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AdhR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rng<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CafA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''ribonuclease G<ref name='LIB:Riley_2006'/>, B3247<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AdhR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rng<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhdF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CafA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , adhR, cafA, ECK3235, JW3216, yhdF, b3247''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 58: / Line 58: @@
 * [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4 3.1.4]<ref name='LIB:Riley_2006'/>
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.E46aadb6b34e67&page=26944&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.E46aadb6b34e67&page=26944&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.E46aadb6b34e67-->
@@ Line 77: / Line 77: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46aadb6d0ca24"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-GO:0008996
+GO:0003723
 |
-ribonuclease G activity
+RNA binding
 |
-PMID:10722715
+GOA:interpro<br />GO_REF:0000002
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR003029
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 103: / Line 103: @@
 |
-GO:0006364
+GO:0004519
 |
-rRNA processing
+endonuclease activity
 |
-PMID:10362534
+GOA:spkw<br />SP_KW:GO_REF:0000004
-|
-IMP: Inferred from Mutant Phenotype
-|
-|
-P
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
-|
-complete
-|-
-|
-|
-GO:0051301
-|
-cell division
-|
-GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0132
+SP_KW:KW-0255
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0016787
-|
-hydrolase activity
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0378
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 160: / Line 122: @@
 |
-GO:0007049
+GO:0005737
 |
-cell cycle
+cytoplasm
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0131
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0006396
-|
-RNA processing
-|
-GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
 InterPro:IPR004659
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0005856
-|
-cytoskeleton
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0206
 |
 C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 228: / Line 152: @@
 |
 F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
 |
-|
-GO:0004540
-|
-ribonuclease activity
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR004659
-|
-F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 255: / Line 160: @@
 |
-GO:0004519
+GO:0005737
 |
-endonuclease activity
+cytoplasm
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0255
+SP_KW:KW-0963
 |
-F
+C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 285: / Line 190: @@
 |
 P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0003723
-|
-RNA binding
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR003029
-|
-F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
 |
-|
-GO:0005515
-|
-protein binding
-|
-PMID:15690043
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P0A7V8
-|
-F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 331: / Line 198: @@
 |
-GO:0003723
+GO:0005856
 |
-RNA binding
+cytoskeleton
 |
-GO_REF:0000002
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR003029
+SP_KW:KW-0206
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0004518
-|
-nuclease activity
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0540
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0004519
-|
-endonuclease activity
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0255
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0008996
-|
-ribonuclease G activity
-|
-PMID:10722715
-|
-IDA: Inferred from Direct Assay
-|
-|
-F
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0006364
-|
-rRNA processing
-|
-PMID:10362534
-|
-IMP: Inferred from Mutant Phenotype
-|
-|
-P
-|
-Seeded from EcoCyc
-|
-complete
-|-
-|
-|
-GO:0005737
-|
-cytoplasm
-|
-GO_REF:0000002<br />GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR004659<br />SP_KW:KW-0963
 |
 C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 449: / Line 221: @@
 cytoskeleton
 |
-GO_REF:0000004
+GO_REF:0000023
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0206
+SP_SL:SL-0090
 |
 C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0006396
-|
-RNA processing
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR004659
-|
-P
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 487: / Line 240: @@
 cell cycle
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
@@ Line 495: / Line 248: @@
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0016787
-|
-hydrolase activity
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0378
-|
-F
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 525: / Line 259: @@
 cell division
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
@@ Line 533: / Line 267: @@
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
-|-
-|
-NOT
-|
-GO:0009451
-|
-RNA modification
-|
-|
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-I think this annotation is incorrect.  RNA modification is The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically." Rng processes 16S RNA, but I could find no evidence that it modifies the sequence.
-|
-required field missing
-|-
-|
-|
-GO:0006401
-|
-RNA catabolic process
-|
-|
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-I think this annotation is incorrect because processing by Rng is involved in the synthesis of functional ribosomes not the turnover of ribosomes (DAS, TAMU).
+|- class="tableEdit_footer"
-|
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.K46aadb6d0ca24&page=26944&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
-required field missing
-|-
-|
-NOT
-|
-GO:0000910
-|
-cytokinesis
-|
-|
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-Overproduction of CafA causes a cell division defect: chains of cells and minicells form when expression of ''cafA'' from a multicopy plasmid is induced by the addition of IPTG <ref name= PMID:8300545/>.  Long axial filaments were also observed to form. (DAS, TAMU)
-|
-required field missing
-|-
-|
-|
-GO:0008996
-|
-ribonuclease G activity
-|
-PMID:10722715
-|
-IDA: Inferred from Direct Assay
-|
-|
-F
-|
-|
-complete
-|-
-|
-|
-GO:0006364
-|
-rRNA processing
-|
-PMID:10362534
-|
-IMP: Inferred from Mutant Phenotype
-|
-|
-P
-|
-|
-complete
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.K46aadb6d0ca24&page=26944&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.K46aadb6d0ca24-->
@@ Line 651: / Line 284: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="T46aadb8e32ea4"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 852: / Line 485: @@
 |
 Experiment(s):EBI-895082<br />
+|-
+|
+Protein
+|
+rpsT
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsU
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpe
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.2
+|-
+|
+Protein
+|
+rpsS
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+eno
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpsM
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.T46aadb8e32ea4&page=26944&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.T46aadb8e32ea4&page=26944&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.T46aadb8e32ea4-->
@@ Line 870: / Line 569: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46aadb8f74075"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |-
 |
@@ Line 881: / Line 580: @@
 |
 From EcoCyc<ref name='LIB:EcoCyc11.1'/>
+|
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.E46aadb8f74075&page=26944&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.E46aadb8f74075&page=26944&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.E46aadb8f74075-->
@@ Line 904: / Line 605: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="I46aadb91c9e0d"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 936: / Line 641: @@
 ,850 - 28,600 (calc based on 15 Y, 1 W, and 6 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.I46aadb91c9e0d&page=26944&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.I46aadb91c9e0d&page=26944&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.I46aadb91c9e0d-->
@@ Line 951: / Line 656: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46aadb924b5ad"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Initiator Methionine
+|
+|
+Removed
+|
+[http://www.uniprot.org/uniprot/P0A9J0#section_features UniProt:P0A9J0]
+|
+|-
+|
+Domain
+|
+..122
+|
+[http://pfam.janelia.org/family/PF00575 PF00575  S1 RNA binding domain]
+|
+|
+PMID:19920124
 |-
 |
 Domain
 |
-- 128
+..394
 |
-[[interpro:IPR003029|S1 motif]]
+[http://pfam.janelia.org/family/PF10150 PF10150  Ribonuclease E/G family]
 |
-[http://www.uniprot.org/uniprot/P0A9J0#section_features UniProt:P0A9J0]
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.X46aadb924b5ad&page=26944&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.X46aadb924b5ad&page=26944&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.X46aadb924b5ad--></td>
@@ Line 976: / Line 705: @@
 </table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.D46a86de4a307f-->
 <!--
@@ Line 984: / Line 714: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="D46a86de4a307f"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>rng
+<beststructure>
-</beststructure>
+gene=rng
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=rng&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P0A9J0 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=rng&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0A9J0 PSI-PRED (P0A9J0)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0A9J0 Genomes TO Protein (P0A9J0)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.D46a86de4a307f&page=26944&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.D46a86de4a307f&page=26944&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.D46a86de4a307f-->
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 1,021: / Line 770: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46aadb9323c13"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.I46aadb9323c13&page=26944&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.I46aadb9323c13&page=26944&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.I46aadb9323c13-->
@@ Line 1,043: / Line 792: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46aadb93854c0"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/90111563 GI:90111563]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_417713.2 GeneID:947744]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0010651
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P0A9J0 UniProtKB/Swiss-Prot:P0A9J0]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG11299
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11299-MONOMER EcoCyc:EG11299-MONOMER]
+EcoGene:EG11299
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[[uniprot:P0A9J0|UniProt:P0A9J0]]
+[http://www.ncbi.nlm.nih.gov/gene?term=947744 GeneID:947744]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF00575 PFAM:PF00575]
+RegulonDB:ECK120001272
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417713 RefSeq:NP_417713]
+EchoBASE:EB1276
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.J46aadb93854c0&page=26944&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.J46aadb93854c0&page=26944&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.J46aadb93854c0-->
@@ Line 1,093: / Line 877: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46a86de75f458"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.V46a86de75f458&page=26944&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.26944.V46a86de75f458&page=26944&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.26944.V46a86de75f458-->
@@ Line 1,114: / Line 898: @@
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0009451_!_RNA modification]][[Category:GO:0016072_!_rRNA metabolic process]][[Category:GO:0006401_!_RNA catabolic process]][[Category:GO:0000910_!_cytokinesis]][[Category:Complex:ribonuclease G (RNAse G)]][[Category:Location:cytoplasm]]

rng:Gene Product(s): Difference between revisions

Latest revision as of 21:01, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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