rng:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Rng

Synonyms

ribonuclease G[1], B3247[2][1], AdhR[2][1], Rng[2][1], YhdF[2][1], CafA[2][1] , adhR, cafA, ECK3235, JW3216, yhdF, b3247

Product description

ribonuclease G (RNAse G)[2][3];

Component of ribonuclease G (RNAse G)[3]

Endoribonuclease G involved in 16S rRNA processing; division and growth, overexpression forms minicells and chains with long axial structures[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003029

F

Seeded from EcoCyc (v14.0)

complete

GO:0004519

endonuclease activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0255

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004659

C

Seeded from EcoCyc (v14.0)

complete

GO:0008996

ribonuclease G activity

PMID:10722715[5]

IDA: Inferred from Direct Assay

F

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0006364

rRNA processing

PMID:10362534[6]

IMP: Inferred from Mutant Phenotype

P

complete

GO:0005856

cytoskeleton

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0206

C

Seeded from EcoCyc (v14.0)

complete

GO:0005856

cytoskeleton

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0090

C

Seeded from EcoCyc (v14.0)

complete

GO:0007049

cell cycle

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0131

P

Seeded from EcoCyc (v14.0)

complete

GO:0051301

cell division

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0132

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of ribonuclease G (RNAse G)

could be indirect

Protein

rpsD

PMID:15690043[7]

Experiment(s):EBI-890107

Protein

rplB

PMID:16606699[8]

Experiment(s):EBI-1145286

Protein

rpsI

PMID:16606699[8]

Experiment(s):EBI-1145286

Protein

rpsC

PMID:16606699[8]

Experiment(s):EBI-1145286

Protein

rpsB

PMID:16606699[8]

Experiment(s):EBI-1145286

Protein

rplQ

PMID:16606699[8]

Experiment(s):EBI-1145286

Protein

racC

PMID:16606699[8]

Experiment(s):EBI-1145286

Protein

dnaK

PMID:15690043[7]

Experiment(s):EBI-895082

Protein

eno

PMID:15690043[7]

Experiment(s):EBI-895082

Protein

rpe

PMID:15690043[7]

Experiment(s):EBI-895082

Protein

rpsE

PMID:15690043[7]

Experiment(s):EBI-895082

Protein

rpsI

PMID:15690043[7]

Experiment(s):EBI-895082

Protein

rpsM

PMID:15690043[7]

Experiment(s):EBI-895082

Protein

rpsO

PMID:15690043[7]

Experiment(s):EBI-895082

Protein

rpsS

PMID:15690043[7]

Experiment(s):EBI-895082

Protein

rpsT

PMID:15690043[7]

Experiment(s):EBI-895082

Protein

rpsU

PMID:15690043[7]

Experiment(s):EBI-895082

Protein

rpsT

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rpsU

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rpe

PMID:19402753[9]

LCMS(ID Probability):99.2

Protein

rpsS

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

eno

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rpsM

PMID:19402753[9]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRKGINMTAE LLVNVTPSET RVAYIDGGIL QEIHIEREAR RGIVGNIYKG RVSRVLPGMQ
AAFVDIGLDK AAFLHASDIM PHTECVAGEE QKQFTVRDIS ELVRQGQDLM VQVVKDPLGT
KGARLTTDIT LPSRYLVFMP GASHVGVSQR IESESERERL KKVVAEYCDE QGGFIIRTAA
EGVGEAELAS DAAYLKRVWT KVMERKKRPQ TRYQLYGELA LAQRVLRDFA DAELDRIRVD
SRLTYEALLE FTSEYIPEMT SKLEHYTGRQ PIFDLFDVEN EIQRALERKV ELKSGGYLII
DQTEAMTTVD INTGAFVGHR NLDDTIFNTN IEATQAIARQ LRLRNLGGII IIDFIDMNNE
DHRRRVLHSL EQALSKDRVK TSVNGFSALG LVEMTRKRTR ESIEHVLCNE CPTCHGRGTV
KTVETVCYEI MREIVRVHHA YDSDRFLVYA SPAVAEALKG EESHSLAEVE IFVGKQVKVQ
IEPLYNQEQF DVVMM
Length

495

Mol. Wt

56.063 kDa

pI

6.0 (calculated)

Extinction coefficient

27,850 - 28,600 (calc based on 15 Y, 1 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A9J0

Domain

35..122

PF00575 S1 RNA binding domain

PMID:19920124[10]

Domain

124..394

PF10150 Ribonuclease E/G family

PMID:19920124[10]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rng taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111563

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947744

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010651

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9J0

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11299

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11299

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947744

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001272

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1276

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Tock, MR et al. (2000) The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'-end-dependent ribonuclease that has context-dependent broad sequence specificity. J. Biol. Chem. 275 8726-32 PubMed
  6. ↑ Wachi, M et al. (1999) Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5' end of 16S rRNA. Biochem. Biophys. Res. Commun. 259 483-8 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  9. ↑ 9.0 9.1 9.2 9.3 9.4 9.5 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  10. ↑ 10.0 10.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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