pcm:Gene Product(s): Difference between revisions

Standard name	Pcm
Synonyms	L-isoaspartate protein carboxylmethyltransferase type II^[1], B2743^[2]^[1], Pcm^[2]^[1] , ECK2738, JW2713, b2743
Product description	L-isoaspartate protein carboxylmethyltransferase type II^[2]^[3] Protein-L-isoaspartate O-methyltransferase, SAM-dependent; repair of isoaspartyl residues; mutant is suseptible to secondary stresses and has a competitive disadvantage in stationary phase; monomeric; overexpression confers tolerance to thermal str^[4]
EC number (for enzymes)	2.1.1.77^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00090	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000682	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:2.1.1.77	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00090	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0963	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005737	cytoplasm	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0086	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006464	protein modification process	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00090	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006464	protein modification process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000682	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008168	methyltransferase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0489	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016740	transferase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0808	F	Seeded from EcoCyc (v14.0)	complete
	GO:0030091	protein repair	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00090	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
cytoplasm
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MVSRRVQALL DQLRAQGIQD EQVLNALAAV PREKFVDEAF EQKAWDNIAL PIGQGQTISQ PYMVARMTEL LELTPQSRVL EIGTGSGYQT AILAHLVQHV CSVERIKGLQ WQARRRLKNL DLHNVSTRHG DGWQGWQARA PFDAIIVTAA PPEIPTALMT QLDEGGILVL PVGEEHQYLK RVRRRGGEFI IDTVEAVRFV PLVKGELA
Length	208
Mol. Wt	23.257 kDa
pI	7.0 (calculated)
Extinction coefficient	26,470 - 26,595 (calc based on 3 Y, 4 W, and 1 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P0A7A5
Domain	4..207	PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)		PMID:19920124^[5]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=pcm taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130650	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:944923	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0009006	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A7A5	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10689	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10689	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:944923	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000682	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0683	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

pcm:Gene Product(s): Difference between revisions

Latest revision as of 20:55, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 18: / Line 18: @@
 |{{Sub}}[[#Localization |Localization]]
 |{{Sub}}[[#Sequence|Sequence]]
+|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
 |{{Sub}}[[#Structure|Structure]]
 |{{Sub}}[[#Gene Product Resources|Resources]]
@@ Line 30: / Line 31: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_nomenclature_help}}
-{|{{Prettytable}}
+{|   id="T46aabb6a1c3ed"  class=" tableEdit Product_nomenclature_table"
 |-
-!{{table heading style}} |Standard name
+!align=left {{table heading style}} |Standard name
-|
+||
-Pcm product
+Pcm
 |-
-!{{table heading style}} |Synonyms
+!align=left {{table heading style}} |Synonyms
-|
+||
-L-isoaspartate protein carboxylmethyltransferase type II product<ref name='LIB:Riley_2006'/>, B2743 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pcm product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''L-isoaspartate protein carboxylmethyltransferase type II<ref name='LIB:Riley_2006'/>, B2743<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Pcm<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2738, JW2713, b2743''
 |-
-!{{table heading style}} |Product description
+!align=left {{table heading style}} |Product description
-|
+||
 L-isoaspartate protein carboxylmethyltransferase type II<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Protein-L-isoaspartate O-methyltransferase, SAM-dependent; repair of isoaspartyl residues; mutant is suseptible to secondary stresses and has a competitive disadvantage in stationary phase; monomeric; overexpression confers tolerance to thermal str<ref name='LIB:EcoGene'/>
 |-
-!{{table heading style}} |EC number (for enzymes)
+!align=left {{table heading style}} |EC number (for enzymes)
-|
+||
-** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.77 2.1.1.77]<ref name='LIB:Riley_2006'/>
+* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.77 2.1.1.77]<ref name='LIB:Riley_2006'/>
-|-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.T46aabb6a1c3ed&page=25813&pagename={{FULLPAGENAMEE}} edit table]
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.T46aabb6a1c3ed&page=25813&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25813.T46aabb6a1c3ed-->
-{{Product_nomenclature_help}}
 <protect><!--Nomenclature_notes--></protect>
 ===Notes===
@@ Line 64: / Line 68: @@
 {{BacktoTop}}
 <protect>
-<big>'''Gene Ontology'''</big>
+<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.25813.G46aabb6b28f6b-->
-<!--box uid=421aa90e079fa326b6494f812ad13e79.25813.G46aabb6b28f6b-->
 <!--
 ******************************************************************************************
@@ Line 71: / Line 74: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46aabb6b28f6b"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-[[Category:GO:0006464_!_protein_modification_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006464_!_protein_modification_process GO:0006464]
+GO:0004719
 |
-protein_modification
+protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000682
+HAMAP:MF_00090
 |
-P
+F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
 |-
 |
 |
-[[Category:GO:0008168_!_methyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008168_!_methyltransferase_activity GO:0008168]
+GO:0004719
 |
-methyltransferase_activity
+protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0489
+InterPro:IPR000682
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
 |-
 |
 |
-[[Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity GO:0004719]
+GO:0004719
 |
-protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity
+protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
+GOA:spec<br />GO_REF:0000003
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000682
+EC:2.1.1.77
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
 |-
 |
 |
-[[Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity GO:0004719]
+GO:0005737
 |
-protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity
+cytoplasm
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000003 GO_REF:0000003]<br />
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-EC:2.1.1.77
+HAMAP:MF_00090
 |
-F
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
 |-
 |
 |
-[[Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004719_!_protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity GO:0004719]
+GO:0005737
 |
-protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_activity
+cytoplasm
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000020 GO_REF:0000020]<br />
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-HAMAP:MF_00090
+SP_KW:KW-0963
 |
-F
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
 |-
 |
 |
-[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]
+GO:0005737
 |
 cytoplasm
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
+GO_REF:0000023
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0963
+SP_SL:SL-0086
 |
 C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
 |-
 |
 |
-[[Category:GO:0006464_!_protein_modification_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006464_!_protein_modification_process GO:0006464]
+GO:0006464
 |
-protein_modification
+protein modification process
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000020 GO_REF:0000020]<br />
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
@@ Line 205: / Line 208: @@
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0006464
+|
+protein modification process
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR000682
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
 |-
 |
 |
-[[Category:GO:0030091_!_protein_repair]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0030091_!_protein_repair GO:0030091]
+GO:0008168
 |
-protein repair
+methyltransferase activity
 |
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0489
 |
-P
+F
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
-required fields missing
+complete
 |-
 |
 |
-[[Category:GO:0016740_!_transferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016740_!_transferase_activity GO:0016740]
+GO:0016740
 |
-transferase_activity
+transferase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
@@ Line 243: / Line 265: @@
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0030091
 |
+protein repair
+|
+GOA:hamap<br />GO_REF:0000020
+|
+IEA: Inferred from Electronic Annotation
+|
+HAMAP:MF_00090
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.G46aabb6b28f6b&page=25813&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.G46aabb6b28f6b&page=25813&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25813.G46aabb6b28f6b-->
-{{Product_GO_help}}
 <span id="Interactions"></span><big>'''Interactions'''</big>
@@ Line 257: / Line 297: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' {{Prettytable}} id='171567'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46aabb734c63b"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
-!Partner Type!!Partner!!Notes
+!|Partner Type!!Partner!!Notes!!References!!Evidence
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.X46aabb734c63b&page=25813&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.X46aabb734c63b&page=25813&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25813.X46aabb734c63b-->
-{{Product_interactions_help}}
 <!--Function_notes--></protect>
 ===Notes===
@@ Line 277: / Line 318: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' {{Prettytable}} id='171568'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46aabb7412846"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |-
 |
 cytoplasm
@@ Line 292: / Line 333: @@
 |
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.C46aabb7412846&page=25813&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.C46aabb7412846&page=25813&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25813.C46aabb7412846-->
-{{Product_localization_help}}
 <protect><!--Localization_notes--></protect>
@@ Line 310: / Line 354: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_physical_properties_help}}
-{|{{Prettytable}}
+{|   id="B46aabb75a5818"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
-!{{table heading style}} |Sequence
+!align=left {{table heading style}} |Sequence
-|
+||
 [http://biocyc.org/ECOLI/sequence-aa?object=EG10689-MONOMER at EcoCyc]
 <pre>MVSRRVQALL DQLRAQGIQD EQVLNALAAV PREKFVDEAF EQKAWDNIAL PIGQGQTISQ
@@ Line 324: / Line 373: @@
 RVRRRGGEFI IDTVEAVRFV PLVKGELA</pre>
 |-
-!{{table heading style}} |Mol. Wt
+!align=left {{table heading style}} |Length
-|
+||
-.26 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table heading style}} |pI
+!align=left {{table heading style}} |Mol. Wt
-|
+||
+.257 kDa
 |-
-!{{table heading style}} |Extinction coefficient
+!align=left {{table heading style}} |pI
-|
+||
-- 26595 (calc based on 3 Y, 4 W, and 1 C residues)
+.0 (calculated)
 |-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.B46aabb75a5818&page=25813&pagename={{FULLPAGENAMEE}} edit table]
+!align=left {{table heading style}} |Extinction coefficient
+||
+,470 - 26,595 (calc based on 3 Y, 4 W, and 1 C residues)
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.B46aabb75a5818&page=25813&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25813.B46aabb75a5818-->
-{{Product_physical_properties_help}}
-<big>'''Domains/Motifs/Modification Sites'''</big>
-<!--box uid=421aa90e079fa326b6494f812ad13e79.25813.M46aabb7620e2d-->
+<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
+<tr align="left" valign="top">
+<td><!--box uid=421aa90e079fa326b6494f812ad13e79.25813.M46aabb7620e2d-->
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' {{Prettytable}} id='171570'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46aabb7620e2d"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
-|-class='sortbottom'
+|-
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.M46aabb7620e2d&page=25813&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|
+Initiator Methionine
+|
+|
+Removed
+|
+[http://www.uniprot.org/uniprot/P0A7A5#section_features UniProt:P0A7A5]
+|
+|-
+|
+Domain
+|
+..207
+|
+[http://pfam.janelia.org/family/PF01135 PF01135  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)]
+|
+|
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.M46aabb7620e2d&page=25813&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79.25813.M46aabb7620e2d-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.25813.M46aabb7620e2d--></td>
-{{Product_domains_motifs_help}}
+<td>
+<!-- motifs column 2-->
+<motif_map/>
+</td>
+</tr>
+</table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25813.N46a8525cf01cd-->
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_structure_help}}
-{|class = 'sortable' {{Prettytable}} id='116392'
+{|   id="N46a8525cf01cd"  class=" tableEdit Product_structure_table"
-|- {{table heading style}}
-!Structure Type!!Organism!!Accession!!Residues covered!!Notes
+|-
-|-class='sortbottom'
+!align=left {{table heading style}} |Structures
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.N46a8525cf01cd&page=25813&pagename={{FULLPAGENAMEE}} edit table] || || || ||
+||
+<beststructure>
+gene=pcm
+taxon=562,83333
+</beststructure>
+|-
+!align=left {{table heading style}} |Models
+||
+View models at:
+* [http://www.proteinmodelportal.org/query/uniprot/P0A7A5 Protein Model Portal]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0A7A5 PSI-PRED (P0A7A5)]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0A7A5 Genomes TO Protein (P0A7A5)] (GTOP)
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.N46a8525cf01cd&page=25813&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25813.N46a8525cf01cd-->
-{{Product_structure_help}}
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 383: / Line 503: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' {{Prettytable}} id='171571'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46aabb76dee37"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
-!Resource type!!Source!!Notes/Reference
+!|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.B46aabb76dee37&page=25813&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.B46aabb76dee37&page=25813&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25813.B46aabb76dee37-->
-{{Product_resources_help}}
 <protect><!--Resources_notes--></protect>
 ===Notes===
@@ Line 404: / Line 525: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' {{Prettytable}} id='171572'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46aabb7749533"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
-!Database!!Accession!!Notes
+!|Database!!Accession!!Notes
 |-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16130650 GI:16130650]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_417223.1 GeneID:944923]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0009006
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10689-MONOMER EcoCyc:EG10689-MONOMER]
+[http://www.uniprot.org/uniprot/P0A7A5 UniProtKB/Swiss-Prot:P0A7A5]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
+[[EcoCyc]]
 |
-[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A7A5 SwissModel:P0A7A5]
+EcoCyc:EG10689
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoGene]]
 |
-[[uniprot:P0A7A5|UniProt:P0A7A5]]
+EcoGene:EG10689
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://pfam.sanger.ac.uk/family?acc=PF01135 PFAM:PF01135]
+[http://www.ncbi.nlm.nih.gov/gene?term=944923 GeneID:944923]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417223 RefSeq:NP_417223]
+RegulonDB:ECK120000682
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P0A7A5 ModBase:P0A7A5]
+EchoBASE:EB0683
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.Y46aabb7749533&page=25813&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.Y46aabb7749533&page=25813&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25813.Y46aabb7749533-->
-{{Product_accessions_help}}
 <protect><!--Accessions_notes--></protect>
 ===Notes===
@@ Line 467: / Line 610: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
 ****************************************************************************************** -->
-{|class = 'sortable' {{Prettytable}} id='116393'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46a85261532cd"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
-!Name!!URL!!Comments
+!|Name!!URL!!Comments
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.B46a85261532cd&page=25813&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25813.B46a85261532cd&page=25813&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.25813.B46a85261532cd-->
-{{Links_help}}
@@ Line 486: / Line 630: @@
 {{BacktoTop}}
 {{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006464_!_protein modification process]][[Category:GO:0030091_!_protein repair]][[Category:Location:cytoplasm]]

pcm:Gene Product(s): Difference between revisions

Latest revision as of 20:55, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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