rluC:Gene Product(s): Difference between revisions

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{|   id="G46aa55ba110ed"  class=" tableEdit GO_table_product dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46aa55ba110ed"  class=" tableEdit GO_table_product dataTable"   
|- {{table_heading_style}}
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!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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{|   id="X46aa55d58a89a"  class=" tableEdit Product_interactions_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46aa55d58a89a"  class=" tableEdit Product_interactions_table dataTable"   
|- {{table heading style}}
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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PMID:19402753
PMID:19402753
|
|
MALDI(Z-score):24.385638  
MALDI(Z-score):24.385638  
|-  
|-  
|
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Line 1,380: Line 1,380:
Protein
Protein
|
|
[[rplA:Gene_Product(s)|rplA]]
rplA
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Protein
Protein
|
|
[[rplR:Gene_Product(s)|rplR]]
rplR
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Protein
Protein
|
|
[[srmB:Gene_Product(s)|srmB]]
srmB
|
|


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PMID:19402753
PMID:19402753
|
|
MALDI(Z-score):25.011900  
MALDI(Z-score):25.011900  
|-  
|-  
|
|
Protein
Protein
|
|
[[rplD:Gene_Product(s)|rplD]]
rplD
|
|


Line 1,424: Line 1,424:
Protein
Protein
|
|
[[aidB:Gene_Product(s)|aidB]]
aidB
|
|


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PMID:19402753
PMID:19402753
|
|
MALDI(Z-score):28.068367  
MALDI(Z-score):28.068367  
|-  
|-  
|
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Protein
Protein
|
|
[[ygiF:Gene_Product(s)|ygiF]]
ygiF
|
|


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PMID:19402753
PMID:19402753
|
|
MALDI(Z-score):38.667044  
MALDI(Z-score):38.667044  
|-  
|-  
|
|
Protein
Protein
|
|
[[rlmL:Gene_Product(s)|rlmL]]
rlmL
|
|


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Protein
Protein
|
|
[[pssA:Gene_Product(s)|pssA]]
pssA
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|


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Protein
Protein
|
|
[[hrpA:Gene_Product(s)|hrpA]]
hrpA
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|


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PMID:19402753
PMID:19402753
|
|
MALDI(Z-score):18.919885  
MALDI(Z-score):18.919885  
|-  
|-  
|
|
Protein
Protein
|
|
[[spoT:Gene_Product(s)|spoT]]
spoT
|
|


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PMID:19402753
PMID:19402753
|
|
MALDI(Z-score):23.376874  
MALDI(Z-score):23.376874  
|-  
|-  
|
|
Protein
Protein
|
|
[[rnr:Gene_Product(s)|rnr]]
rnr
|
|


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Protein
Protein
|
|
[[yhiR:Gene_Product(s)|yhiR]]
yhiR
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|


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PMID:19402753
PMID:19402753
|
|
MALDI(Z-score):39.672540  
MALDI(Z-score):39.672540  
|-  
|-  
|
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Protein
Protein
|
|
[[ybcJ:Gene_Product(s)|ybcJ]]
ybcJ
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|


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Protein
Protein
|
|
[[yibL:Gene_Product(s)|yibL]]
yibL
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Protein
Protein
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[[yfiF:Gene_Product(s)|yfiF]]
yfiF
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Protein
Protein
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[[yncE:Gene_Product(s)|yncE]]
yncE
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Protein
Protein
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[[ybjD:Gene_Product(s)|ybjD]]
ybjD
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PMID:19402753
PMID:19402753
|
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MALDI(Z-score):19.204851  
MALDI(Z-score):19.204851  
|-  
|-  
|
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Protein
Protein
|
|
[[rluE:Gene_Product(s)|rluE]]
rluE
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Protein
Protein
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[[rplL:Gene_Product(s)|rplL]]
rplL
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{|   id="M46aa55d63f1ca"  class=" tableEdit Product_localization_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46aa55d63f1ca"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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{|   id="R46aa55d815f7d"  class=" tableEdit Product_motif_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46aa55d815f7d"  class=" tableEdit Product_motif_table dataTable"   
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!|Type!!Residues!!Description!!Notes!!References
!|Type!!Residues!!Description!!Notes!!References
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View models at:
View models at:
* [http://www.proteinmodelportal.org/query/uniprot/P0AA39 Protein Model Portal]
* [http://www.proteinmodelportal.org/query/uniprot/P0AA39 Protein Model Portal]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0AA39 PSI-PRED (P0AA39)]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0AA39 Genomes TO Protein (P0AA39)] (GTOP)


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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46aa55d99f08c"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference
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{|   id="M46aa55d9ec22f"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46aa55d9ec22f"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWiki Page]])
[[ASAP]]
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0003675&formSubmitReturn=1 ASAP:ABE-0003675]
ASAP:ABE-0003675
|
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Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11118 ECOCYC:EG11118]
EcoCyc:EG11118
|
|
Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG11118 EcoGene:EG11118]
EcoGene:EG11118
|
|
Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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Escherichia coli str. K-12 substr. MG1655  
Escherichia coli str. K-12 substr. MG1655  
|-
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[[RegulonDB]]
|
RegulonDB:ECK120001102
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB1108
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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{|   id="K46a7e89a3537a"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46a7e89a3537a"  class=" tableEdit Links_table"   
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!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 20:34, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RluC

Synonyms

23S rRNA pseudouridylate synthase[1], B1086[2][1], YceC[2][1], RluC[2][1] , ECK1071, JW1072, yceC, b1086

Product description

23S rRNA pseudouridine synthase[2][3]

23S rRNA pseudouridine synthase; specific to U955, U2504, and U2580; non-essential gene[4]

EC number (for enzymes)
edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002942

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006145

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006224

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006225

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020103

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0009982

pseudouridine synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006145

F

Seeded from EcoCyc (v14.0)

complete

GO:0009982

pseudouridine synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006224

F

Seeded from EcoCyc (v14.0)

complete

GO:0000455

enzyme-directed rRNA pseudouridine synthesis

PMID:9843401[5]

IDA: Inferred from Direct Assay

P

complete

GO:0009982

pseudouridine synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006225

F

Seeded from EcoCyc (v14.0)

complete

GO:0009982

pseudouridine synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020103

F

Seeded from EcoCyc (v14.0)

complete

GO:0031118

rRNA pseudouridine synthesis

PMID:9660827[6]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc (v14.0)

complete

GO:0031118

rRNA pseudouridine synthesis

PMID:9843401[5]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

accA

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

aceE

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

aceF

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

aidB

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

yncE

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

deaD

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

hrpA

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

lpdA

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

pssA

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rhlE

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

rplA

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rplB

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rplC

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rplD

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rplE

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

rplF

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rplI

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rplM

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rplO

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rplS

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rplV

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rplX

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rpmB

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

rpoB

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

rpoC

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

rpsA

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

rpsB

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rpsC

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rpsD

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

rpsE

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rpsG

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rpsM

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

secA

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

spoT

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

srmB

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

rnr

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-883997, EBI-890236

Protein

ybjD

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

ycbY

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

rluB

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-890236

Protein

yfiF

PMID:15690043[7]

Experiment(s):EBI-882671, EBI-879491, EBI-890236

Protein

ygiF

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

yhiR

PMID:15690043[7]

Experiment(s):EBI-882671

Protein

hupA

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

hupB

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rplL

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rplN

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rplP

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rplQ

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rplR

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rplT

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rplU

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rpsF

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rpsN

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rpsP

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rpsR

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rpsT

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

yibL

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rluE

PMID:15690043[7]

Experiment(s):EBI-890236

Protein

rplB

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

rpoB

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

rplA

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

uspG

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

rplU

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

rpsM

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

rpsG

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

rpoC

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

yedD

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

ptsP

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

rplQ

PMID:16606699[8]

Experiment(s):EBI-1138798

Protein

secA

PMID:19402753[9]

MALDI(Z-score):24.385638

Protein

rplP

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rplE

PMID:19402753[9]

LCMS(ID Probability):81.2 MALDI(Z-score):30.574216

Protein

hupB

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rpsM

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):17.503927

Protein

rplO

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):30.739506

Protein

rplN

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):2.281625

Protein

rpmB

PMID:19402753[9]

LCMS(ID Probability):97.9 MALDI(Z-score):17.053160

Protein

rplI

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):37.856150

Protein

rpsF

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rpsR

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rplT

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):19.395974

Protein

hupA

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753[9]

LCMS(ID Probability):98.1 MALDI(Z-score):28.357209

Protein

rplX

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):21.448910

Protein

rpsN

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):30.778814

Protein

rpsD

PMID:19402753[9]

LCMS(ID Probability):80.8 MALDI(Z-score):35.042694

Protein

rplB

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):38.200016

Protein

rplQ

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):26.431199

Protein

rplF

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):37.043758

Protein

rplA

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):31.232887

Protein

rplR

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

srmB

PMID:19402753[9]

MALDI(Z-score):25.011900

Protein

rplD

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):23.361680

Protein

aidB

PMID:19402753[9]

MALDI(Z-score):28.068367

Protein

ygiF

PMID:19402753[9]

MALDI(Z-score):38.667044

Protein

rlmL

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):27.193001

Protein

pssA

PMID:19402753[9]

LCMS(ID Probability):99.0 MALDI(Z-score):28.761839

Protein

hrpA

PMID:19402753[9]

MALDI(Z-score):18.919885

Protein

spoT

PMID:19402753[9]

MALDI(Z-score):23.376874

Protein

rnr

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):32.605279

Protein

yhiR

PMID:19402753[9]

MALDI(Z-score):39.672540

Protein

ybcJ

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):24.933504

Protein

yibL

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):3.839710

Protein

yfiF

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):39.923321

Protein

yncE

PMID:19402753[9]

LCMS(ID Probability):99.6 MALDI(Z-score):35.663691

Protein

ybjD

PMID:19402753[9]

MALDI(Z-score):19.204851

Protein

rluE

PMID:19402753[9]

LCMS(ID Probability):99.6

Protein

rplL

PMID:19402753[9]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKTETPSVKI VAITADEAGQ RIDNFLRTQL KGVPKSMIYR ILRKGEVRVN KKRIKPEYKL
EAGDEVRIPP VRVAEREEEA VSPHLQKVAA LADVILYEDD HILVLNKPSG TAVHGGSGLS
FGVIEGLRAL RPEARFLELV HRLDRDTSGV LLVAKKRSAL RSLHEQLREK GMQKDYLALV
RGQWQSHVKS VQAPLLKNIL QSGERIVRVS QEGKPSETRF KVEERYAFAT LVRCSPVTGR
THQIRVHTQY AGHPIAFDDR YGDREFDRQL TEAGTGLNRL FLHAAALKFT HPGTGEVMRI
EAPMDEGLKR CLQKLRNAR
Length

319

Mol. Wt

36.026 kDa

pI

10.2 (calculated)

Extinction coefficient

15,930 - 16,180 (calc based on 7 Y, 1 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

20..66

PF01479 S4 domain

PMID:19920124[10]

Domain

101..250

PF00849 RNA pseudouridylate synthase

PMID:19920124[10]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rluC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129049

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945637

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003675

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AA39

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11118

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11118

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945637

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001102

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1108

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Huang, L et al. (1998) Identification of two Escherichia coli pseudouridine synthases that show multisite specificity for 23S RNA. Biochemistry 37 15951-7 PubMed
  6. ↑ Conrad, J et al. (1998) The rluC gene of Escherichia coli codes for a pseudouridine synthase that is solely responsible for synthesis of pseudouridine at positions 955, 2504, and 2580 in 23 S ribosomal RNA. J. Biol. Chem. 273 18562-6 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 7.24 7.25 7.26 7.27 7.28 7.29 7.30 7.31 7.32 7.33 7.34 7.35 7.36 7.37 7.38 7.39 7.40 7.41 7.42 7.43 7.44 7.45 7.46 7.47 7.48 7.49 7.50 7.51 7.52 7.53 7.54 7.55 7.56 7.57 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  9. ↑ 9.00 9.01 9.02 9.03 9.04 9.05 9.06 9.07 9.08 9.09 9.10 9.11 9.12 9.13 9.14 9.15 9.16 9.17 9.18 9.19 9.20 9.21 9.22 9.23 9.24 9.25 9.26 9.27 9.28 9.29 9.30 9.31 9.32 9.33 9.34 9.35 9.36 9.37 9.38 9.39 9.40 9.41 9.42 9.43 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  10. ↑ 10.0 10.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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