htpG:Gene Product(s): Difference between revisions

Standard name	HtpG
Synonyms	molecular chaperone HSP90 family^[1], B0473^[2]^[1], HtpG^[2]^[1], C62.5^[2]^[1], Hsp90^[2]^[1] , ECK0467, JW0462, b0473
Product description	HtpG^[2]^[3]; Component of molecular chaperone, HSP90 family^[3] Heat shock chaperone, HSP90 family; has ATPase activity; binds RpoH; rpoH regulon; dimeric^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00505	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001404	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003594	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR019805	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0067	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005829	cytosol	PMID:16858726^[5]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006457	protein folding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00505	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006457	protein folding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001404	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006457	protein folding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR019805	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006950	response to stress	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001404	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006950	response to stress	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR019805	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006950	response to stress	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0346	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc (v14.0)	complete
	GO:0019898	extrinsic to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9903	C	Seeded from EcoCyc (v14.0)	complete
	GO:0009408	response to heat	PMID:8349564^[6]	IEP: Inferred from Expression Pattern		P		complete
	GO:0051082	unfolded protein binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00505	F	Seeded from EcoCyc (v14.0)	complete
	GO:0051082	unfolded protein binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001404	F	Seeded from EcoCyc (v14.0)	complete
	GO:0051082	unfolded protein binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR019805	F	Seeded from EcoCyc (v14.0)	complete
	GO:0006974	response to DNA damage stimulus	PMID:11967071^[7]	IEP: Inferred from Expression Pattern		P		complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of molecular chaperone, HSP90 family	could be indirect
Protein	rpoC		PMID:15690043^[8]	Experiment(s):EBI-889372
Protein	hyfG		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	mcrB		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	pepB		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	rplB		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	rpmC		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	rpmG		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	rpsF		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	rpsG		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	ugpB		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	ycbW		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	yeaI		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	yggR		PMID:15690043^[8]	Experiment(s):EBI-894374
Protein	hemF		PMID:16606699^[9]	Experiment(s):EBI-1136800
Protein	ugpB		PMID:19402753^[10]	LCMS(ID Probability):99.0
Protein	hyfG		PMID:19402753^[10]	LCMS(ID Probability):99.0
Protein	mcrB		PMID:19402753^[10]	LCMS(ID Probability):99.0
Protein	yggR		PMID:19402753^[10]	LCMS(ID Probability):99.0
Protein	ycbW		PMID:19402753^[10]	LCMS(ID Probability):99.0
Protein	yeaI		PMID:19402753^[10]	LCMS(ID Probability):99.0
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MKGQETRGFQ SEVKQLLHLM IHSLYSNKEI FLRELISNAS DAADKLRFRA LSNPDLYEGD GELRVRVSFD KDKRTLTISD NGVGMTRDEV IDHLGTIAKS GTKSFLESLG SDQAKDSQLI GQFGVGFYSA FIVADKVTVR TRAAGEKPEN GVFWESAGEG EYTVADITKE DRGTEITLHL REGEDEFLDD WRVRSIISKY SDHIALPVEI EKREEKDGET VISWEKINKA QALWTRNKSE ITDEEYKEFY KHIAHDFNDP LTWSHNRVEG KQEYTSLLYI PSQAPWDMWN RDHKHGLKLY VQRVFIMDDA EQFMPNYLRF VRGLIDSSDL PLNVSREILQ DSTVTRNLRN ALTKRVLQML EKLAKDDAEK YQTFWQQFGL VLKEGPAEDF ANQEAIAKLL RFASTHTDSS AQTVSLEDYV SRMKEGQEKI YYITADSYAA AKSSPHLELL RKKGIEVLLL SDRIDEWMMN YLTEFDGKPF QSVSKVDESL EKLADEVDES AKEAEKALTP FIDRVKALLG ERVKDVRLTH RLTDTPAIVS TDADEMSTQM AKLFAAAGQK VPEVKYIFEL NPDHVLVKRA ADTEDEAKFS EWVELLLDQA LLAERGTLED PNLFIRRMNQ LLVS
Length	624
Mol. Wt	71.424 kDa
pI	5.0 (calculated)
Extinction coefficient	81,820 (calc based on 18 Y, 10 W, and 0 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Modification Site	409	phosphorylation site at S409	probability less than 75%	PMID:17938405^[11]
Modification Site	410	phosphorylation site at S410	probability less than 75%	PMID:17938405^[11]
Modification Site	405	phosphorylation site at T405	probability less than 75%	PMID:17938405^[11]
Modification Site	104	phosphorylation site at S104	probability greater than 75%	PMID:17938405^[11]
Modification Site	404	phosphorylation site at S404	probability less than 75%	PMID:17938405^[11]
Domain	27..183	PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase		PMID:19920124^[12]
Domain	209..624	PF00183 Hsp90 protein		PMID:19920124^[12]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=htpG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128457	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:945099	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0001642	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A6Z3	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10461	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10461	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:945099	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000454	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0456	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
↑ Chuang, SE & Blattner, FR (1993) Characterization of twenty-six new heat shock genes of Escherichia coli. J. Bacteriol. 175 5242-52 PubMed
↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed
↑ ^8.00 ^8.01 ^8.02 ^8.03 ^8.04 ^8.05 ^8.06 ^8.07 ^8.08 ^8.09 ^8.10 ^8.11 ^8.12 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ ^10.0 ^10.1 ^10.2 ^10.3 ^10.4 ^10.5 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ ^11.0 ^11.1 ^11.2 ^11.3 ^11.4 Macek, B et al. (2008) Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol. Cell Proteomics 7 299-307 PubMed
↑ ^12.0 ^12.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

htpG:Gene Product(s): Difference between revisions

Latest revision as of 20:26, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|  id="Z46aa321dbfef9"  class=" tableEdit Product_nomenclature_table"
+{|   id="Z46aa321dbfef9"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-molecular chaperone HSP90 family<ref name='LIB:Riley_2006'/>, B0473<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HtpG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, C62.5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hsp90<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''molecular chaperone HSP90 family<ref name='LIB:Riley_2006'/>, B0473<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HtpG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, C62.5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hsp90<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0467, JW0462, b0473''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 77: / Line 77: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|   id="Y46aa321f28bf5"  class=" tableEdit GO_table_product dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46aa321f28bf5"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-GO:0042623
+GO:0000166
 |
-ATPase activity, coupled
+nucleotide binding
 |
-PMID:9707442
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
+|
+SP_KW:KW-0547
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
 |
+|
+GO:0005524
+|
+ATP binding
+|
+GOA:hamap<br />GO_REF:0000020
+|
+IEA: Inferred from Electronic Annotation
+|
+HAMAP:MF_00505
 |
 F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 103: / Line 122: @@
 |
-GO:0006457
+GO:0005524
+|
+ATP binding
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR001404
 |
-protein folding
+F
 |
-PMID:10931286
+Seeded from [[EcoCyc]] (v14.0)
 |
-NR
+complete
+|-
 |
 |
-P
+GO:0005524
+|
+ATP binding
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR003594
+|
+F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 122: / Line 160: @@
 |
-GO:0005515
+GO:0005524
 |
-protein binding
+ATP binding
 |
-PMID:15690043
+GOA:interpro<br />GO_REF:0000002
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0A8T7
+InterPro:IPR019805
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 141: / Line 179: @@
 |
-GO:0005515
+GO:0005524
 |
-protein binding
+ATP binding
 |
-PMID:16606699
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0A6Y8
+SP_KW:KW-0067
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 160: / Line 198: @@
 |
-GO:0005515
+GO:0005829
 |
-protein binding
+cytosol
 |
-PMID:16606699
+PMID:16858726
 |
-IPI: Inferred from Physical Interaction
+IDA: Inferred from Direct Assay
 |
-UniProtKB:P36553
 |
-F
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 179: / Line 217: @@
 |
-GO:0005515
+GO:0005886
 |
-protein binding
+plasma membrane
 |
-PMID:16606699
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:Q46808
+SP_KW:KW-0997
 |
-F
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 198: / Line 236: @@
 |
-GO:0000166
+GO:0005886
 |
-nucleotide binding
+plasma membrane
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0547
+SP_KW:KW-1003
 |
-F
+C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 217: / Line 255: @@
 |
-GO:0005524
+GO:0006457
 |
-ATP binding
+protein folding
 |
-GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000020
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR003594<br />SP_KW:KW-0067<br />HAMAP:MF_00505
+HAMAP:MF_00505
 |
-F
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 236: / Line 274: @@
 |
-GO:0005737
+GO:0006457
 |
-cytoplasm
+protein folding
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0963
+InterPro:IPR001404
 |
-C
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 259: / Line 297: @@
 protein folding
 |
-GO_REF:0000002<br />GO_REF:0000020
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR019805
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0006950
+|
+response to stress
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR001404
+|
+P
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0006950
+|
+response to stress
+|
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR001404<br />HAMAP:MF_00505
+InterPro:IPR019805
 |
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 278: / Line 354: @@
 response to stress
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
@@ Line 286: / Line 362: @@
 P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 297: / Line 373: @@
 membrane
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
@@ Line 305: / Line 381: @@
 C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 312: / Line 388: @@
 |
-GO:0051082
+GO:0019898
 |
-unfolded protein binding
+extrinsic to membrane
 |
-GO_REF:0000002<br />GO_REF:0000020
+GO_REF:0000023
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR001404<br />HAMAP:MF_00505
+SP_SL:SL-9903
 |
-F
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
 |-
 |
 |
-GO:0006457
+GO:0009408
 |
-protein folding
+response to heat
 |
-PMID:10931286
+PMID:8349564
 |
+IEP: Inferred from Expression Pattern
 |
 |
 P
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
 |
-required fields missing
+complete
 |-
 |
 |
-GO:0005829
+GO:0051082
 |
-cytosol
+unfolded protein binding
 |
-PMID:16858726
+GOA:hamap<br />GO_REF:0000020
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
+HAMAP:MF_00505
 |
-C
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 369: / Line 445: @@
 |
-GO:0005886
+GO:0051082
 |
-plasma membrane
+unfolded protein binding
 |
-GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
+InterPro:IPR001404
 |
-C
+F
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
 |-
 |
 |
-GO:0042623
+GO:0051082
 |
-ATPase activity, coupled
+unfolded protein binding
 |
-PMID:9707442
+GOA:interpro<br />GO_REF:0000002
 |
-IDA
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR019805
 |
 F
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
-required fields missing
+complete
 |-
 |
 |
-GO:0009408
+GO:0006974
 |
-response to heat
+response to DNA damage stimulus
 |
-PMID:8349564
+PMID:11967071
 |
 IEP: Inferred from Expression Pattern
@@ Line 436: / Line 512: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|   id="A46aa322796726"  class=" tableEdit Product_interactions_table dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46aa322796726"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 604: / Line 680: @@
 |
 Experiment(s):EBI-1136800<br />
+|-
+|
+Protein
+|
+ugpB
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+hyfG
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+mcrB
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+yggR
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+ycbW
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
+|-
+|
+Protein
+|
+yeaI
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.0
 |- class="tableEdit_footer"
@@ Line 622: / Line 764: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|   id="K46a7c398ef9f1"  class=" tableEdit Product_localization_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46a7c398ef9f1"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Source!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |- class="tableEdit_footer"
@@ Line 647: / Line 789: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|  id="K46aa3229ae1c5"  class=" tableEdit Product_phys_prop_table"
+{|   id="K46aa3229ae1c5"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 679: / Line 825: @@
 !align=left {{table heading style}} |Extinction coefficient
 ||
-,820 (calc based on 18 Y, 10 W, and  C residues)
+,820 (calc based on 18 Y, 10 W, and 0 C residues)
 |- class="tableEdit_footer"
@@ Line 696: / Line 842: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|   id="I46aa322a137ed"  class=" tableEdit Product_motif_table dataTable"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46aa322a137ed"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
 !|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Modification Site
+|
+|
+phosphorylation site at S409
+|
+[[PHOSIDA#p-values|probability less than 75%]]
+|
+PMID:17938405
+|-
+|
+Modification Site
+|
+|
+phosphorylation site at S410
+|
+[[PHOSIDA#p-values|probability less than 75%]]
+|
+PMID:17938405
+|-
+|
+Modification Site
+|
+|
+phosphorylation site at T405
+|
+[[PHOSIDA#p-values|probability less than 75%]]
+|
+PMID:17938405
 |-
 |
@@ Line 721: / Line 900: @@
 |
 PMID:17938405
+|-
+|
+Domain
+|
+..183
+|
+[http://pfam.janelia.org/family/PF02518 PF02518  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase]
+|
+|
+PMID:19920124
+|-
+|
+Domain
+|
+..624
+|
+[http://pfam.janelia.org/family/PF00183 PF00183  Hsp90 protein]
+|
+|
+PMID:19920124
 |- class="tableEdit_footer"
@@ Line 743: / Line 944: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|  id="G46aa322a5d1b4"  class=" tableEdit Product_structure_table"
+{|   id="G46aa322a5d1b4"  class=" tableEdit Product_structure_table"
 |-
@@ Line 756: / Line 957: @@
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P0A6Z3 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0A6Z3 PSI-PRED (P0A6Z3)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0A6Z3 Genomes TO Protein (P0A6Z3)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 |- class="tableEdit_footer"
@@ Line 801: / Line 1,000: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|   id="X46aa322ee511c"  class=" tableEdit Product_resource_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46aa322ee511c"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
@@ Line 823: / Line 1,022: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|   id="M46aa322f3b769"  class=" tableEdit Gene_accessions_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46aa322f3b769"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16128457 GI:16128457]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_415006.1 GeneID:945099]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10461-MONOMER EcoCyc:EG10461-MONOMER]
+ASAP:ABE-0001642
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P0A6Z3 UniProtKB/Swiss-Prot:P0A6Z3]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG10461
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG10461
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[[uniprot:P0A6Z3|UniProt:P0A6Z3]]
+[http://www.ncbi.nlm.nih.gov/gene?term=945099 GeneID:945099]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF02518 PFAM:PF02518]
+RegulonDB:ECK120000454
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415006 RefSeq:NP_415006]
+EchoBASE:EB0456
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |- class="tableEdit_footer"
@@ Line 873: / Line 1,107: @@
 *
 ****************************************************************************************** -->
-{|   id="L46a7c3a3a7cbc"  class=" tableEdit Links_table"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a7c3a3a7cbc"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
@@ Line 894: / Line 1,128: @@
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0006457_!_protein folding]][[Category:GO:0042623_!_ATPase activity, coupled]][[Category:Complex:molecular chaperone, HSP90 family]][[Category:Products with structures in PDB]]

htpG:Gene Product(s): Difference between revisions

Latest revision as of 20:26, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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