tig:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Add jmol applet area.
touch table
 
(37 intermediate revisions by 3 users not shown)
Line 35: Line 35:
*  
*  
****************************************************************************************** -->{{Product_nomenclature_help}}
****************************************************************************************** -->{{Product_nomenclature_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="B46aa2fa1bcf93" class=" tableEdit Product_nomenclature_table"


|-
|-
Line 44: Line 44:
!align=left {{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
||
||
peptidyl-prolyl cis/trans isomerase (trigger factor)<ref name='LIB:Riley_2006'/>, B0436<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tig<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''peptidyl-prolyl cis/trans isomerase (trigger factor)<ref name='LIB:Riley_2006'/>, B0436<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tig<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0430, JW0426, b0436''
|-
|-
!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
Line 56: Line 56:




|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.B46aa2fa1bcf93&page=20516&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.B46aa2fa1bcf93&page=20516&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.B46aa2fa1bcf93-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.B46aa2fa1bcf93-->
Line 75: Line 75:
*  
*  
****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G46aa2fa2b32e1"  class=" tableEdit GO_table_product dataTable" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-  
|-  
|
|


|
|
GO:0051301
GO:0003755
|
|
cell division
peptidyl-prolyl cis-trans isomerase activity
|
|
GO_REF:0000004
GOA:hamap<br />GO_REF:0000020
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
SP_KW:KW-0132
HAMAP:MF_00303
|
|
P
F
|
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 101: Line 101:


|
|
GO:0016853
GO:0003755
|
|
isomerase activity
peptidyl-prolyl cis-trans isomerase activity
|
|
GO_REF:0000004
GOA:spkw<br />SP_KW:GO_REF:0000004
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
SP_KW:KW-0413
SP_KW:KW-0697
|
|
F
F
|
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 120: Line 120:


|
|
GO:0015031
 
|
|
protein transport
 
|
|
GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000020
 
|
|
IEA: Inferred from Electronic Annotation
 
|
InterPro:IPR005215<br />InterPro:IPR008880<br />InterPro:IPR008881<br />HAMAP:MF_00303
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|


|
GO:0007049
|
cell cycle
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0131
|
P
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete
|-
|
|


|
|
GO:0006457
I need a term for prolyl isomerase
|
protein folding
|
GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR001179<br />InterPro:IPR008880<br />InterPro:IPR008881<br />SP_KW:KW-0697<br />HAMAP:MF_00303
|
P
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
|
complete
Missing: GO ID, evidence, reference
|-  
|-  
|
|
Line 181: Line 143:
peptidyl-prolyl cis-trans isomerase activity
peptidyl-prolyl cis-trans isomerase activity
|
|
GO_REF:0000004<br />GO_REF:0000020
PMID:8633085
|
|
IEA: Inferred from Electronic Annotation
IDA: Inferred from Direct Assay
|
SP_KW:KW-0697<br />HAMAP:MF_00303
|
F
|
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
|
complete
|-
|
|


|
GO:0005515
|
protein binding
|
PMID:16606699
|
IPI: Inferred from Physical Interaction
|
UniProtKB:P04983
|
|
F
F
|
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 215: Line 158:


|
|
GO:0005624
GO:0005829
|
|
membrane fraction
cytosol
|
|
PMID:16858726
PMID:16858726
Line 227: Line 170:
C
C
|
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 234: Line 177:


|
|
GO:0005739
GO:0007049
|
|
mitochondrion
cell cycle
|
|
PMID:16858726
GOA:spkw<br />SP_KW:GO_REF:0000004
|
|
IDA: Inferred from Direct Assay
IEA: Inferred from Electronic Annotation
|
|
 
SP_KW:KW-0131
|
|
C
P
|
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 253: Line 196:


|
|
GO:0005829
GO:0015031
|
|
cytosol
protein transport
|
|
PMID:16858726
GOA:hamap<br />GO_REF:0000020
|
|
IDA: Inferred from Direct Assay
IEA: Inferred from Electronic Annotation
|
|
 
HAMAP:MF_00303
|
|
C
P
|
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 272: Line 215:


|
|
GO:0003755
GO:0015031
|
|
peptidyl-prolyl cis-trans isomerase activity
protein transport
|
|
GO_REF:0000020<br />GO_REF:0000004
GOA:interpro<br />GO_REF:0000002
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
HAMAP:MF_00303<br />SP_KW:KW-0697
InterPro:IPR005215
|
|
F
P
|
|
Seeded from EcoCyc
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 291: Line 234:


|
|
GO:0005515
GO:0015031
|
|
protein binding
protein transport
|
|
PMID:16606699
GOA:interpro<br />GO_REF:0000002
|
|
IPI: Inferred from Physical Interaction
IEA: Inferred from Electronic Annotation
|
|
UniProtKB:P04983
InterPro:IPR008880
|
|
F
P
|
|
Seeded from EcoCyc
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 310: Line 253:


|
|
GO:0005624
GO:0015031
|
|
membrane fraction
protein transport
|
|
PMID:16858726
GOA:interpro<br />GO_REF:0000002
|
|
IDA: Inferred from Direct Assay
IEA: Inferred from Electronic Annotation
|
|
 
InterPro:IPR008881
|
|
C
P
|
|
Seeded from EcoCyc
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 329: Line 272:


|
|
GO:0005829
GO:0016020
|
|
cytosol
membrane
|
|
PMID:16858726
PMID:16858726
Line 341: Line 284:
C
C
|
|
Seeded from EcoCyc
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 348: Line 291:


|
|
GO:0006457
GO:0044444
|
|
protein folding
cytoplasmic part
|
|
GO_REF:0000020<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
PMID:9009267
|
|
IEA: Inferred from Electronic Annotation
TAS: Traceable Author Statement
|
|
HAMAP:MF_00303<br />InterPro:IPR001179<br />InterPro:IPR008880<br />InterPro:IPR008881<br />SP_KW:KW-0697
 
|
|
P
C
|
|
Seeded from EcoCyc
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
Line 367: Line 310:


|
|
GO:0007049
GO:0051083
|
cell cycle
|
|
GO_REF:0000004
'de novo' cotranslational protein folding
|
|
IEA: Inferred from Electronic Annotation
PMID:8633085
|
|
SP_KW:KW-0131
IDA: Inferred from Direct Assay
|
P
|
Seeded from EcoCyc
|
complete
|-
|
|


|
GO:0015031
|
protein transport
|
GO_REF:0000020<br />GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_00303<br />InterPro:IPR005215<br />InterPro:IPR008880<br />InterPro:IPR008881
|
|
P
P
|
|
Seeded from EcoCyc
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|
 
|
GO:0016853
|
isomerase activity
|
GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0413
|
F
|
Seeded from EcoCyc
|
|
complete  
complete  
Line 428: Line 333:
cell division
cell division
|
|
GO_REF:0000004
GOA:spkw<br />SP_KW:GO_REF:0000004
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
Line 436: Line 341:
P
P
|
|
Seeded from EcoCyc
Seeded from [[EcoCyc]] (v14.0)
|
|
complete  
complete  
|-
|
|
GO:0000910
|
cytokinesis
|
|
|
|
P
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing 
|-
|
|
GO:0005737
|
cytoplasm
|
|
|
|
C
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
|
required fields missing 
|-
|
|
|
|
|
|
|
|
I need a term for prolyl isomerase
|
required field missing


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.G46aa2fa2b32e1&page=20516&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.G46aa2fa2b32e1&page=20516&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.G46aa2fa2b32e1-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.G46aa2fa2b32e1-->
Line 510: Line 358:
*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
****************************************************************************************** -->{{Product_interactions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46aa2fad6afe3"  class=" tableEdit Product_interactions_table dataTable"   
|- {{table heading style}}
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
Line 1,063: Line 911:
|
|
Experiment(s):EBI-1136591<br />  
Experiment(s):EBI-1136591<br />  
|-
|
Protein
|
rpmB
|
|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
rpmC
|
|
PMID:19402753
|
LCMS(ID Probability):99.0
|-
|
Protein
|
rpsA
|
|
PMID:19402753
|
LCMS(ID Probability):99.0


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.L46aa2fad6afe3&page=20516&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.L46aa2fad6afe3&page=20516&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.L46aa2fad6afe3-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.L46aa2fad6afe3-->
Line 1,081: Line 962:
*  
*  
****************************************************************************************** -->{{Product_localization_help}}
****************************************************************************************** -->{{Product_localization_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46a7c10ce71be"  class=" tableEdit Product_localization_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.Y46a7c10ce71be&page=20516&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.Y46a7c10ce71be&page=20516&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.Y46a7c10ce71be-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.Y46a7c10ce71be-->
Line 1,106: Line 987:
*  
*  
****************************************************************************************** -->{{Product_physical_properties_help}}
****************************************************************************************** -->{{Product_physical_properties_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
{|   id="X46aa2faf29685" class=" tableEdit Product_phys_prop_table"
 
|-
!align=left {{table heading style}} |Name
||


|-
|-
Line 1,135: Line 1,020:
!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
||
||
17,420 (calc based on 8 Y, 1 W, and C residues)
17,420 (calc based on 8 Y, 1 W, and 0 C residues)


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.X46aa2faf29685&page=20516&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.X46aa2faf29685&page=20516&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.X46aa2faf29685-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.X46aa2faf29685-->
Line 1,152: Line 1,037:
*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46aa2faf82c6d"  class=" tableEdit Product_motif_table dataTable"   
|- {{table heading style}}
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
|-  
|-  
|
|
Domain
Domain
|
|
161 - 246
152..238
|
|
[[interpro:IPR000774|PPIase FKBP-type]]
[http://pfam.janelia.org/family/PF00254 PF00254  FKBP-type peptidyl-prolyl cis-trans isomerase]
|
|
[http://www.uniprot.org/uniprot/P0A850#section_features UniProt:P0A850]


|-class='sortbottom'
|
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.P46aa2faf82c6d&page=20516&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
PMID:19920124
|-
|
Domain
|
1..145
|
[http://pfam.janelia.org/family/PF05697 PF05697  Bacterial trigger factor protein (TF)]
|
 
|
PMID:19920124
|-
|
Domain
|
262..413
|
[http://pfam.janelia.org/family/PF05698 PF05698  Bacterial trigger factor protein (TF) C-terminus]
|
 
|
PMID:19920124
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.P46aa2faf82c6d&page=20516&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.P46aa2faf82c6d--></td>
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.P46aa2faf82c6d--></td>
Line 1,186: Line 1,095:
*  
*  
****************************************************************************************** -->{{Product_structure_help}}
****************************************************************************************** -->{{Product_structure_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="H46aa2fafcc2ff" class=" tableEdit Product_structure_table"


|-
|-
!align=left {{table heading style}} |Structures
!align=left {{table heading style}} |Structures
||
||
<beststructure>tig
<beststructure>
562</beststructure>
gene=tig
 
taxon=562,83333
</beststructure>
|-
|-
!align=left {{table heading style}} |Models
!align=left {{table heading style}} |Models
||
||
View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=tig&sub=keywordSearc EcoliPredict]
* [http://www.proteinmodelportal.org/query/uniprot/P0A850 Protein Model Portal]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=tig&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0A850 PSI-PRED (P0A850)]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0A850 Genomes TO Protein (P0A850)] (GTOP)
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.H46aa2fafcc2ff&page=20516&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.H46aa2fafcc2ff&page=20516&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.H46aa2fafcc2ff-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.H46aa2fafcc2ff-->
Line 1,244: Line 1,151:
*  
*  
****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46aa2fb1952bc"  class=" tableEdit Product_resource_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.L46aa2fb1952bc&page=20516&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.L46aa2fb1952bc&page=20516&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.L46aa2fb1952bc-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.L46aa2fb1952bc-->
Line 1,266: Line 1,173:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46aa2fb1e0209"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/16128421 GI:16128421]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11003-MONOMER EcoCyc:EG11003-MONOMER]
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
|
[http://www.ncbi.nlm.nih.gov/protein/NP_414970.1 GeneID:945081]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[ASAP]]
|
ASAP:ABE-0001511
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[http://www.uniprot.org/uniprot/P0A850 UniProtKB/Swiss-Prot:P0A850]
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
[[EcoCyc]]
|
|
[[uniprot:P0A850|UniProt:P0A850]]
EcoCyc:EG11003
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://pfam.sanger.ac.uk/family?acc=PF05697 PFAM:PF05697]
EcoGene:EG11003
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414970 RefSeq:NP_414970]
[http://www.ncbi.nlm.nih.gov/gene?term=945081 GeneID:945081]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://salilab.org/modbase/searchbyid?databaseID=P0A850 ModBase:P0A850]
RegulonDB:ECK120000992
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1OMS PDB:1OMS]
EchoBASE:EB0996
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.A46aa2fb1e0209&page=20516&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.A46aa2fb1e0209&page=20516&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.A46aa2fb1e0209-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.A46aa2fb1e0209-->
Line 1,330: Line 1,258:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46a7c1143bc45"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.F46a7c1143bc45&page=20516&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20516.F46a7c1143bc45&page=20516&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.F46a7c1143bc45-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20516.F46a7c1143bc45-->
Line 1,351: Line 1,279:
{{BacktoTop}}
{{BacktoTop}}
[[Category:Proteins]]
[[Category:Proteins]]
[[Category:GO:0006457_!_protein folding]][[Category:GO:0000910_!_cytokinesis]][[Category:GO:0005737_!_cytoplasm]][[Category:Products with structures in PDB]]

Latest revision as of 20:25, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Tig

Synonyms

peptidyl-prolyl cis/trans isomerase (trigger factor)[1], B0436[2][1], Tig[2][1] , ECK0430, JW0426, b0436

Product description

trigger factor; a molecular chaperone involved in cell division[2][3]

Trigger factor, protein folding chaperone; also peptidyl-prolyl cis-trans isomerase; interacts with nascent polypeptide chains[4]

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00303

F

Seeded from EcoCyc (v14.0)

complete

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697

F

Seeded from EcoCyc (v14.0)

complete

I need a term for prolyl isomerase

Missing: GO ID, evidence, reference

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

PMID:8633085[5]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726[6]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0007049

cell cycle

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0131

P

Seeded from EcoCyc (v14.0)

complete

GO:0015031

protein transport

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00303

P

Seeded from EcoCyc (v14.0)

complete

GO:0015031

protein transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005215

P

Seeded from EcoCyc (v14.0)

complete

GO:0015031

protein transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008880

P

Seeded from EcoCyc (v14.0)

complete

GO:0015031

protein transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008881

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726[6]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0044444

cytoplasmic part

PMID:9009267[7]

TAS: Traceable Author Statement

C

Seeded from EcoCyc (v14.0)

complete

GO:0051083

'de novo' cotranslational protein folding

PMID:8633085[5]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc (v14.0)

complete

GO:0051301

cell division

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0132

P

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aspA

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

yneI

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

yniB

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

lysA

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

rplC

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

rplD

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

rplW

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

rpmB

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

rpmC

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

rpsA

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

rpsB

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

rpsE

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

rpsG

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

tdcA

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

yfiP

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

ade

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

gltJ

PMID:15690043[8]

Experiment(s):EBI-895036

Protein

rpoC

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

ompA

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rplF

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

sdhB

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

ycgL

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

narZ

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

hflB

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

putA

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rpsC

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

fadB

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

gapA

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

adk

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

pflB

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rpsI

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rhsD

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

ppsA

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rpoB

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

slyD

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

ompF

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rpsE

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rpsU

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rspA

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

narY

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

yfaS

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

sdhA

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

htpG

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

lacZ

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rplN

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

aceE

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

nadE

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

fliT

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rpsD

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rhsC

PMID:16606699[9]

Experiment(s):EBI-1136591

Protein

rpmB

PMID:19402753[10]

LCMS(ID Probability):99.6

Protein

rpmC

PMID:19402753[10]

LCMS(ID Probability):99.0

Protein

rpsA

PMID:19402753[10]

LCMS(ID Probability):99.0

edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MQVSVETTQG LGRRVTITIA ADSIETAVKS ELVNVAKKVR IDGFRKGKVP MNIVAQRYGA
SVRQDVLGDL MSRNFIDAII KEKINPAGAP TYVPGEYKLG EDFTYSVEFE VYPEVELQGL
EAIEVEKPIV EVTDADVDGM LDTLRKQQAT WKEKDGAVEA EDRVTIDFTG SVDGEEFEGG
KASDFVLAMG QGRMIPGFED GIKGHKAGEE FTIDVTFPEE YHAENLKGKA AKFAINLKKV
EERELPELTA EFIKRFGVED GSVEGLRAEV RKNMERELKS AIRNRVKSQA IEGLVKANDI
DVPAALIDSE IDVLRRQAAQ RFGGNEKQAL ELPRELFEEQ AKRRVVVGLL LGEVIRTNEL
KADEERVKGL IEEMASAYED PKEVIEFYSK NKELMDNMRN VALEEQAVEA VLAKAKVTEK
ETTFNELMNQ QA
Length

432

Mol. Wt

48.192 kDa

pI

4.7 (calculated)

Extinction coefficient

17,420 (calc based on 8 Y, 1 W, and 0 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

152..238

PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase

PMID:19920124[11]

Domain

1..145

PF05697 Bacterial trigger factor protein (TF)

PMID:19920124[11]

Domain

262..413

PF05698 Bacterial trigger factor protein (TF) C-terminus

PMID:19920124[11]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=tig taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128421

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945081

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001511

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A850

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11003

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11003

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945081

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000992

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0996

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Hesterkamp, T et al. (1996) Escherichia coli trigger factor is a prolyl isomerase that associates with nascent polypeptide chains. Proc. Natl. Acad. Sci. U.S.A. 93 4437-41 PubMed
  6. ↑ 6.0 6.1 Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
  7. ↑ Scholz, C et al. (1997) Cooperation of enzymatic and chaperone functions of trigger factor in the catalysis of protein folding. EMBO J. 16 54-8 PubMed
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 8.13 8.14 8.15 8.16 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  9. ↑ 9.00 9.01 9.02 9.03 9.04 9.05 9.06 9.07 9.08 9.09 9.10 9.11 9.12 9.13 9.14 9.15 9.16 9.17 9.18 9.19 9.20 9.21 9.22 9.23 9.24 9.25 9.26 9.27 9.28 9.29 9.30 9.31 9.32 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  10. ↑ 10.0 10.1 10.2 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  11. ↑ 11.0 11.1 11.2 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=tig:Gene_Product(s)&oldid=1492456"