tauA:Gene Product(s): Difference between revisions
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!align=left {{table heading style}} |Synonyms | !align=left {{table heading style}} |Synonyms | ||
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taurine transporter subunit<ref name='LIB:Riley_2006'/>, periplasmic-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B0365<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaiR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SsiA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TauA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, taurine transport system periplasmic protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''taurine transporter subunit<ref name='LIB:Riley_2006'/>, periplasmic-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B0365<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaiR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SsiA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TauA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, taurine transport system periplasmic protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0362, JW0357, ssiA, yaiR, b0365'' | ||
|- | |- | ||
!align=left {{table heading style}} |Product description | !align=left {{table heading style}} |Product description | ||
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Component of [[:Category:Complex:TauA/TauB/TauC ABC transporter|TauA/TauB/TauC ABC transporter]]<ref name='LIB:EcoCyc10.6'/>; [[:Category:Complex:TauA/TauB/TauC ABC transporter|taurine ABC transporter]]<ref name='LIB:EcoCyc11.1'/> | Component of [[:Category:Complex:TauA/TauB/TauC ABC transporter|TauA/TauB/TauC ABC transporter]]<ref name='LIB:EcoCyc10.6'/>; [[:Category:Complex:TauA/TauB/TauC ABC transporter|taurine ABC transporter]]<ref name='LIB:EcoCyc11.1'/> | ||
Periplasmic taurine binding protein<ref name='LIB:EcoGene'/> | |||
|- | |- | ||
!align=left {{table heading style}} |EC number (for enzymes) | !align=left {{table heading style}} |EC number (for enzymes) | ||
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===Notes=== | ===Notes=== | ||
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{{BacktoTop}} | {{BacktoTop}} | ||
<protect> | <protect> | ||
<big>'''Gene Ontology'''</big><br /> | <big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.20347.R46aa2b37ae51f--> | ||
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!|Qualifier!!GO ID!!GO term name!!Reference | !|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status | ||
|- | |||
| | |||
| | |||
GO:0005215 | |||
| | |||
transporter activity | |||
| | |||
GOA:interpro<br />GO_REF:0000002 | |||
| | |||
IEA: Inferred from Electronic Annotation | |||
| | |||
InterPro:IPR001638 | |||
| | |||
F | |||
| | |||
Seeded from [[EcoCyc]] (v14.0) | |||
| | |||
complete | |||
|- | |- | ||
| | | | ||
| | | | ||
GO:0005215 | |||
| | |||
transporter activity | |||
| | | | ||
GOA:interpro<br />GO_REF:0000002 | |||
| | |||
IEA: Inferred from Electronic Annotation | |||
| | |||
InterPro:IPR007210 | |||
| | |||
F | |||
| | |||
Seeded from [[EcoCyc]] (v14.0) | |||
| | |||
complete | |||
|- | |||
| | |||
| | |||
GO:0006810 | |||
| | |||
transport | |||
| | | | ||
GOA:interpro<br />GO_REF:0000002 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
InterPro:IPR001638 | |||
| | | | ||
P | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
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GO:0006810 | |||
| | | | ||
transport | |||
| | | | ||
GOA:interpro<br />GO_REF:0000002 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
InterPro:IPR007210 | |||
| | | | ||
P | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
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GO:0006810 | |||
| | | | ||
transport | transport | ||
| | | | ||
GOA:spkw<br />SP_KW:GO_REF:0000004 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
SP_KW:KW-0813 | |||
| | | | ||
P | P | ||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
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GO:0030288 | |||
| | | | ||
outer membrane-bounded periplasmic space | |||
| | | | ||
GOA:interpro<br />GO_REF:0000002 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
InterPro:IPR001638 | |||
| | | | ||
C | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | complete | ||
|- | |- | ||
| | | | ||
| | | | ||
GO:0042597 | |||
| | | | ||
periplasmic space | |||
| | | | ||
GOA:spkw<br />SP_KW:GO_REF:0000004 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | |||
| | | | ||
SP_KW:KW-0574 | |||
| | | | ||
C | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | |||
|- | |- | ||
| | | | ||
| | | | ||
GO:0042597 | |||
| | | | ||
periplasmic space | |||
| | | | ||
GO_REF:0000023 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | |||
| | | | ||
SP_SL:SL-0200 | |||
| | | | ||
C | |||
| | | | ||
Seeded from EcoCyc | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | |||
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|- {{table heading style}} | |- {{table heading style}} | ||
!|Partner Type!!Partner!!Notes!!References!!Evidence | !|Partner Type!!Partner!!Notes!!References!!Evidence | ||
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Protein | Protein | ||
| | | | ||
Subunits of [[:Category:Complex:TauA/TauB/TauC ABC transporter|TauA/TauB/TauC ABC transporter]] | |||
| | | | ||
could be indirect | could be indirect | ||
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Protein | Protein | ||
| | | | ||
tnaA<br /> | |||
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Experiment(s): | PMID:16606699 | ||
| | |||
Experiment(s):EBI-1136381<br /> | |||
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<!--Function_notes--></protect> | <!--Function_notes--></protect> | ||
===Notes=== | ===Notes=== | ||
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{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E46a7bc7ee091c" class=" tableEdit Product_localization_table" | ||
|- {{table heading style}} | |- {{table heading style}} | ||
!|Compartment!!Description!!Evidence!!Notes | !|Compartment!!Description!!Evidence!!Reference/Source!!Notes | ||
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Periplasm | |||
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|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20347.E46a7bc7ee091c&page=20347&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || || | PMID:8774726 | ||
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[http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB3085 EchoLocation:tauA] | |||
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<protect><!--Localization_notes--></protect> | <protect><!--Localization_notes--></protect> | ||
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{| | {| id="H46aa2b3f8280c" class=" tableEdit Product_phys_prop_table" | ||
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!align=left {{table heading style}} |Name | |||
|| | |||
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KAFAKSAIDA QQPYIANPDV WLKQPENISK LARLSGVPEG DVPGLVKGNT YLTPQQQTAE | KAFAKSAIDA QQPYIANPDV WLKQPENISK LARLSGVPEG DVPGLVKGNT YLTPQQQTAE | ||
LTGPVNKAII DTAQFLKEQG KVPAVANDYS QYVTSRFVQ</pre> | LTGPVNKAII DTAQFLKEQG KVPAVANDYS QYVTSRFVQ</pre> | ||
|- | |||
!align=left {{table heading style}} |Length | |||
|| | |||
339 | |||
|- | |- | ||
!align=left {{table heading style}} |Mol. Wt | !align=left {{table heading style}} |Mol. Wt | ||
|| | || | ||
36.458 kDa | |||
|- | |- | ||
!align=left {{table heading style}} |pI | !align=left {{table heading style}} |pI | ||
|| | || | ||
6.9 (calculated) | |||
|- | |- | ||
!align=left {{table heading style}} |Extinction coefficient | !align=left {{table heading style}} |Extinction coefficient | ||
|| | || | ||
50,420 - 50,545 (calc based on 8 Y, 7 W, and 1 C residues) | |||
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<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span> | |||
<!--box uid=421aa90e079fa326b6494f812ad13e79.20347.K46aa2b3fdb644--> | <span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table> | ||
<tr align="left" valign="top"> | |||
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!|Type!!Residues!!Description!!Notes | !|Type!!Residues!!Description!!Notes!!References | ||
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[[uniprotmanual:signal|UniProt Manual:Signal Peptides]] | [[uniprotmanual:signal|UniProt Manual:Signal Peptides]] | ||
| | | | ||
[http://www.uniprot.org/uniprot/Q47537#section_features UniProt:Q47537] | [http://www.uniprot.org/uniprot/Q47537#section_features UniProt:Q47537] | ||
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|- | |||
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Domain | |||
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23..252 | |||
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[http://pfam.janelia.org/family/PF04069 PF04069 Substrate binding domain of ABC-type glycine betaine transport system] | |||
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<td> | |||
<!-- motifs column 2--> | |||
<motif_map/> | |||
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<span id= | <table><tr valign='top'><td> | ||
<span id='Structure'></span><big>'''Structure'''</big><br /> | |||
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!align=left {{table heading style}} |Structures | !align=left {{table heading style}} |Structures | ||
|| | || | ||
<beststructure>tauA | <beststructure> | ||
562</beststructure> | gene=tauA | ||
taxon=562,83333 | |||
</beststructure> | |||
|- | |- | ||
!align=left {{table heading style}} |Models | !align=left {{table heading style}} |Models | ||
|| | || | ||
View models at: | View models at: | ||
* [http:// | * [http://www.proteinmodelportal.org/query/uniprot/Q47537 Protein Model Portal] | ||
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=Q47537 PSI-PRED (Q47537)] | |||
* [http://bioinf.cs.ucl.ac.uk/ | * [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=Q47537 Genomes TO Protein (Q47537)] (GTOP) | ||
* [http://spock.genes.nig.ac.jp/~genome/ | |||
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<!--Structure_notes--></protect> | </td><td></protect> | ||
==== Structure figures ==== | |||
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</td><tr><table><!--Structure_notes--></protect> | |||
===Notes=== | ===Notes=== | ||
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{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46aa2b407bdd8" class=" tableEdit Product_resource_table" | ||
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!|Resource type!!Source!!Notes/Reference | !|Resource type!!Source!!Notes/Reference | ||
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===Notes=== | ===Notes=== | ||
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* | * | ||
****************************************************************************************** -->{{Gene_accessions_help}} | ****************************************************************************************** -->{{Gene_accessions_help}} | ||
{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J46aa2b40c5c31" class=" tableEdit Gene_accessions_table" | ||
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!|Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
|- | |- | ||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | ||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/90111122 GI:90111122] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/NP_414899.2 GeneID:945030] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | | | ||
[ | [[ASAP]] | ||
| | | | ||
ASAP:ABE-0001256 | |||
| | |||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|- | |||
| | |||
[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]]) | |||
| | |||
[http://www.uniprot.org/uniprot/Q47537 UniProtKB/Swiss-Prot:Q47537] | |||
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Escherichia coli str. K-12 substr. MG1655 | |||
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[[EcoCyc]] | |||
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EcoCyc:G6217 | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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[[EcoGene]] | |||
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EcoGene:EG13300 | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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[http:// | [http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]]) | ||
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[http:// | [http://www.ncbi.nlm.nih.gov/gene?term=945030 GeneID:945030] | ||
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Escherichia coli str. K-12 substr. MG1655 | |||
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[[RegulonDB]] | |||
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RegulonDB:ECK120002831 | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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[[EchoBASE]] | |||
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EchoBASE:EB3085 | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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===Categories=== | ===Categories=== | ||
{{BacktoTop}} | {{BacktoTop}} | ||
[[Category:Proteins]] | [[Category:Proteins]] | ||
Latest revision as of 20:24, 17 February 2015
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
TauA |
|---|---|
| Synonyms |
taurine transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B0365[2][1], YaiR[2][1], SsiA[2][1], TauA[2][1], taurine transport system periplasmic protein[2][1] , ECK0362, JW0357, ssiA, yaiR, b0365 |
| Product description |
Component of TauA/TauB/TauC ABC transporter[2]; taurine ABC transporter[3] Periplasmic taurine binding protein[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005215 |
transporter activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0005215 |
transporter activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006810 |
transport |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006810 |
transport |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006810 |
transport |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0030288 |
outer membrane-bounded periplasmic space |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0042597 |
periplasmic space |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0042597 |
periplasmic space |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0200 |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of TauA/TauB/TauC ABC transporter |
could be indirect |
||
|
Protein |
tnaA |
Experiment(s):EBI-1136381 | ||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
|
Periplasm |
| |||
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MNVFIPEYCS HNKTGEQTIM AISSRNTLLA ALAFIAFQAQ AVNVTVAYQT SAEPAKVAQA DNTFAKESGA TVDWRKFDSG ASIVRALASG DVQIGNLGSS PLAVAASQQV PIEVFLLASK LGNSEALVVK KTISKPEDLI GKRIAVPFIS TTHYSLLAAL KHWGIKPGQV EIVNLQPPAI IAAWQRGDID GAYVWAPAVN ALEKDGKVLT DSEQVGQWGA PTLDVWVVRK DFAEKHPEVV KAFAKSAIDA QQPYIANPDV WLKQPENISK LARLSGVPEG DVPGLVKGNT YLTPQQQTAE LTGPVNKAII DTAQFLKEQG KVPAVANDYS QYVTSRFVQ |
| Length |
339 |
| Mol. Wt |
36.458 kDa |
| pI |
6.9 (calculated) |
| Extinction coefficient |
50,420 - 50,545 (calc based on 8 Y, 7 W, and 1 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
|
Structure figures
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ Quadroni, M et al. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. Eur. J. Biochem. 239 773-81 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
Categories