matB:Gene Product(s): Difference between revisions
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<noinclude>{{TabsTop}} | <noinclude>{{TabsTop}} | ||
{{Tab|Quickview|matB}}{{Tab|Gene|matB}}{{Tab On|Gene Product(s)|matB}}{{Tab|Expression|matB}}{{Tab|Evolution|matB}}{{Tab|On One Page|matB}}{{TabsBottom}} | {{Tab|Quickview|matB}}{{Tab|Gene|matB}}{{Tab On|Gene Product(s)|matB}}{{Tab|Expression|matB}}{{Tab|Evolution|matB}}{{Tab|On One Page|matB}}{{TabsBottom}} | ||
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|{{Sub}}[[#Localization |Localization]] | |{{Sub}}[[#Localization |Localization]] | ||
|{{Sub}}[[#Sequence|Sequence]] | |{{Sub}}[[#Sequence|Sequence]] | ||
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]] | |||
|{{Sub}}[[#Structure|Structure]] | |{{Sub}}[[#Structure|Structure]] | ||
|{{Sub}}[[#Gene Product Resources|Resources]] | |{{Sub}}[[#Gene Product Resources|Resources]] | ||
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==Nomenclature== | ==Nomenclature== | ||
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|- | |- | ||
!{{table heading style}} |Standard name | !align=left {{table heading style}} |Standard name | ||
| | || | ||
YagZ | YagZ | ||
|- | |- | ||
!{{table heading style}} |Synonyms | !align=left {{table heading style}} |Synonyms | ||
| | || | ||
conserved protein<ref name='LIB:Riley_2006'/>, B0293<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YagZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MatB<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> | ''conserved protein<ref name='LIB:Riley_2006'/>, B0293<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YagZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MatB<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , ECK0292, ecpA, JW0287, yagZ, b0293'' | ||
|- | |- | ||
!{{table heading style}} |Product description | !align=left {{table heading style}} |Product description | ||
| | || | ||
conserved protein<ref name='LIB:EcoCyc10.6'/> | conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
Cryptic Mat fimbrillin gene, expressed in O18acK1H7 strains<ref name='LIB:EcoGene'/> | |||
|- | |- | ||
!{{table heading style}} |EC number (for enzymes) | !align=left {{table heading style}} |EC number (for enzymes) | ||
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===Notes=== | ===Notes=== | ||
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==Function== | ==Function== | ||
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<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.20191.J46aa2753b9625--> | |||
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!Qualifier!!GO ID!!GO term name!!Reference | !|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status | ||
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= | <span id="Interactions"></span><big>'''Interactions'''</big> | ||
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!Partner Type!!Partner!!Notes | !|Partner Type!!Partner!!Notes!!References!!Evidence | ||
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===Notes=== | ===Notes=== | ||
==Localization== | ==Localization== | ||
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!|Compartment!!Description!!Evidence!!Reference/Source!!Notes | |||
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| | |||
Periplasm | |||
| | |||
| | |||
PMID:16522795 | |||
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[http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB3335 EchoLocation:yagZ] | |||
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===Notes=== | ===Notes=== | ||
==Structure and Physical Properties== | ==Structure and Physical Properties== | ||
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<protect> | <protect> | ||
= | <span id="Sequence"></span><big>'''Physical Properties'''</big> | ||
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|- | |||
!align=left {{table heading style}} |Name | |||
|| | |||
|- | |- | ||
!{{table heading style}} |Sequence | !align=left {{table heading style}} |Sequence | ||
| | || | ||
[http://biocyc.org/ECOLI/sequence-aa?object=G6164-MONOMER at EcoCyc] | [http://biocyc.org/ECOLI/sequence-aa?object=G6164-MONOMER at EcoCyc] | ||
<pre>MKKKVLAIAL VTVFTGMGVA QAADVTAQAV ATWSATAKKD TTSKLVVTPL GSLAFQYAEG | <pre>MKKKVLAIAL VTVFTGMGVA QAADVTAQAV ATWSATAKKD TTSKLVVTPL GSLAFQYAEG | ||
| Line 94: | Line 164: | ||
WSGDVSVQFD ATWTS</pre> | WSGDVSVQFD ATWTS</pre> | ||
|- | |- | ||
!{{table heading style}} |Mol. Wt | !align=left {{table heading style}} |Length | ||
|| | |||
195 | |||
|- | |||
!align=left {{table heading style}} |Mol. Wt | |||
|| | |||
20.111 kDa | |||
|- | |||
!align=left {{table heading style}} |pI | |||
|| | |||
4.5 (calculated) | |||
|- | |||
!align=left {{table heading style}} |Extinction coefficient | |||
|| | |||
22,460 (calc based on 4 Y, 3 W, and 0 C residues) | |||
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<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table> | |||
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!|Type!!Residues!!Description!!Notes!!References | |||
|- | |||
| | | | ||
motif | |||
|- | | | ||
1-22 | |||
| | |||
[[uniprotmanual:signal|UniProt Manual:Signal Peptides]] | |||
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[http://www.uniprot.org/uniprot/P0AAA3#section_features UniProt:P0AAA3] | |||
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<table><tr valign='top'><td> | |||
<span id='Structure'></span><big>'''Structure'''</big><br /> | |||
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!{{table heading style}} | | !align=left {{table heading style}} |Structures | ||
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<beststructure> | |||
gene=matB | |||
taxon=562,83333 | |||
</beststructure> | |||
|- | |- | ||
| | !align=left {{table heading style}} |Models | ||
|| | |||
View models at: | |||
* [http://www.proteinmodelportal.org/query/uniprot/P0AAA3 Protein Model Portal] | |||
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0AAA3 PSI-PRED (P0AAA3)] | |||
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0AAA3 Genomes TO Protein (P0AAA3)] (GTOP) | |||
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=== | </td><td></protect> | ||
==== Structure figures ==== | |||
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===Notes=== | ===Notes=== | ||
==Gene Product Resources== | ==Gene Product Resources== | ||
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===Notes=== | ===Notes=== | ||
==Accessions in Other Databases== | ==Accessions in Other Databases== | ||
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!Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
|- | |- | ||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/16128278 GI:16128278] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/NP_414827.1 GeneID:948759] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]]) | |||
| | |||
[http://www.uniprot.org/uniprot/P0AAA3 UniProtKB/Swiss-Prot:P0AAA3] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]]) | ||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/gene?term=948759 GeneID:948759] | ||
| | | | ||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |- | ||
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[[RegulonDB]] | |||
| | | | ||
RegulonDB: | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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[[EchoBASE]] | |||
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EchoBASE: | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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===Notes=== | ===Notes=== | ||
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==Links== | ==Links== | ||
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<noinclude> | <noinclude> | ||
==References== | ==References== | ||
{{BacktoTop}} | |||
{{RefHelp}} | {{RefHelp}} | ||
<references/> | <references /> | ||
__NOTOC__ | __NOTOC__ | ||
===Categories=== | |||
{{BacktoTop}} | |||
[[Category:Proteins]] | |||
Latest revision as of 20:23, 17 February 2015
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YagZ |
|---|---|
| Synonyms |
conserved protein[1], B0293[2][1], YagZ[2][1], MatB[3][1] , ECK0292, ecpA, JW0287, yagZ, b0293 |
| Product description |
Cryptic Mat fimbrillin gene, expressed in O18acK1H7 strains[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
|
Periplasm |
| |||
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MKKKVLAIAL VTVFTGMGVA QAADVTAQAV ATWSATAKKD TTSKLVVTPL GSLAFQYAEG IKGFNSQKGL FDVAIEGDST ATAFKLTSRL ITNTLTQLDT SGSTLNVGVD YNGAAVEKTG DTVMIDTANG VLGGNLSPLA NGYNASNRTT AQDGFTFSII SGTTNGTTAV TDYSTLPEGI WSGDVSVQFD ATWTS |
| Length |
195 |
| Mol. Wt |
20.111 kDa |
| pI |
4.5 (calculated) |
| Extinction coefficient |
22,460 (calc based on 4 Y, 3 W, and 0 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
|
Structure figures
Notes
Gene Product Resources
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| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
RegulonDB: |
Escherichia coli str. K-12 substr. MG1655 | |
|
EchoBASE: |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Marani, P et al. (2006) New Escherichia coli outer membrane proteins identified through prediction and experimental verification. Protein Sci. 15 884-9 PubMed
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