Phage lambda orf-401:Gene Product(s): Difference between revisions

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|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Gene Product Resources|Resources]]
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</noinclude>
</noinclude>
==Nomenclature==
==Nomenclature==
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|-
|-
!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
|
||
orf-401  
orf-401
|-
!align=left {{table heading style}} |Synonyms
||
orf-401, lambdap27
|-
|-
!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Product description
|
||
orf-401, lambdap27
Tail fiber protein, stf <ref name='PMID:1439823'/>
|-
|-
!{{table heading style}} |Product description
!align=left {{table heading style}} |EC number (for enzymes)
|
||
Tail fiber protein


|-
!{{table heading style}} |EC number (for enzymes)
|


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<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
===Notes===
===Notes===
 
Classic "wild-type" phage Lambda is known as λPaPa.  However, this particular phage as a frameshift mutation in the stf gene.  The frameshift creates 2 orfs: orf-401 and [[Phage_lambda_orf-314:Gene_Product(s)|orf-314]].  Phage Lambda without the frameshift, and thus with the intact stf gene, is referred to as Ur-λ.  <ref name='PMID:1439823'/>


==Function==
==Function==
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<big>'''Gene Ontology'''</big>
<big>'''Gene Ontology'''</big>
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|- {{table_heading_style}}
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-class='sortbottom'
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|
 
|
GO:0098024
|
virus tail, fiber
|
PMID:1439823
|
IMP: Inferred from Mutant Phenotype
|
 
|
C
|
Phage lambda wt (LambdaPaPa) vs Ur-Lambda.
|
complete
 
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{{Product_GO_help}}


<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions '''</big>
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!|Partner Type!!Partner!!Notes!!References!!Evidence
 
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{{Product_interactions_help}}
<!--Function_notes-->
<!--Function_notes--></protect>
===Notes===
===Notes===


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==Localization==
==Localization==
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!Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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<span id="Sequence"></span><big>'''Physical Properties'''</big>
<span id="Sequence"></span><big>'''Physical Properties'''</big>
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|-
|-
!{{table heading style}} |Sequence
!align=left {{table heading style}} |Name
|
||


|-
!align=left {{table heading style}} |Sequence
||
<pre>MAVKISGVLK DGTGKPVQNC TIQLKARRNS TTVVVNTVGS ENPDEAGRYS MDVEYGQYSV
<pre>MAVKISGVLK DGTGKPVQNC TIQLKARRNS TTVVVNTVGS ENPDEAGRYS MDVEYGQYSV
ILQVDGFPPS HAGTITVYED SQPGTLNDFL CAMTEDDARP EVLRRLELMV EEVARNASVV
ILQVDGFPPS HAGTITVYED SQPGTLNDFL CAMTEDDARP EVLRRLELMV EEVARNASVV
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ASKEAAKSSE TNASSSAGRA ASSATAAENS ARAAKTSETN ARSSETAAER SASAAADAKT
ASKEAAKSSE TNASSSAGRA ASSATAAENS ARAAKTSETN ARSSETAAER SASAAADAKT
AAAGSASTAS TKATEAAGSA VSASQSKSAA EAAAIRAKNS AKRAEDIASA VALEDADTTR
AAAGSASTAS TKATEAAGSA VSASQSKSAA EAAAIRAKNS AKRAEDIASA VALEDADTTR
KGIVQLSSAT NSTSETLAAT PKAVKVVMDE TNRKAHWTVR H</pre>  
KGIVQLSSAT NSTSETLAAT PKAVKVVMDE TNRKAHWTVR H</pre>
|-
|-
!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Length
|
||
39.88 kDa (calc) 
401
|-
|-
!{{table heading style}} |pI
!align=left {{table heading style}} |Mol. Wt
|
||
39.882 kDa
|-
|-
!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |pI
|
||
5.6 (calculated)
|-
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!align=left {{table heading style}} |Extinction coefficient
||
11,460 - 11,710 (calc based on 4 Y, 1 W, and 2 C residues)
 
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<big>'''Domains/Motifs/Modification Sites'''</big>
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
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!|Type!!Residues!!Description!!Notes!!References
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{{Product_domains_motifs_help}}</td>
<td>
<!-- motifs column 2-->
<motif_map/>
</td>
</tr>
</table>


<span id="Structure"></span><big>'''Structure'''</big>
<table><tr valign='top'><td>
<span id='Structure'></span><big>'''Structure'''</big><br />
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{|   class=" tableEdit Product_structure_table" 
 
|-
!align=left {{table heading style}} |Structures
||
<beststructure>
gene=Phage_lambda_orf-401
taxon=10710
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 
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{{Product_structure_help}}
<!--Structure_notes--></protect>
</td><td></protect>
==== Structure figures ====
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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===Notes===
===Notes===


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
 
|
|- class="tableEdit_footer"
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=protein&cmd=&term=NP_040602.1 Genbank:NP_040602.1] 
|
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==Links==
==Links==
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<noinclude>
<noinclude>
==References==
==References==
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<references/>
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__NOTOC__
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===Categories===
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Latest revision as of 20:19, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

orf-401

Synonyms

orf-401, lambdap27

Product description

Tail fiber protein, stf [1]

EC number (for enzymes)


edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Classic "wild-type" phage Lambda is known as λPaPa. However, this particular phage as a frameshift mutation in the stf gene. The frameshift creates 2 orfs: orf-401 and orf-314. Phage Lambda without the frameshift, and thus with the intact stf gene, is referred to as Ur-λ. [1]

Function

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Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098024

virus tail, fiber

PMID:1439823[1]

IMP: Inferred from Mutant Phenotype

C

Phage lambda wt (LambdaPaPa) vs Ur-Lambda.

complete

edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MAVKISGVLK DGTGKPVQNC TIQLKARRNS TTVVVNTVGS ENPDEAGRYS MDVEYGQYSV
ILQVDGFPPS HAGTITVYED SQPGTLNDFL CAMTEDDARP EVLRRLELMV EEVARNASVV
AQSTADAKKS AGDASASAAQ VAALVTDATD SARAASTSAG QAASSAQEAS SGAEAASAKA
TEAEKSAAAA ESSKNAAATS AGAAKTSETN AAASQQSAAT SASTAATKAS EAATSARDAV
ASKEAAKSSE TNASSSAGRA ASSATAAENS ARAAKTSETN ARSSETAAER SASAAADAKT
AAAGSASTAS TKATEAAGSA VSASQSKSAA EAAAIRAKNS AKRAEDIASA VALEDADTTR
KGIVQLSSAT NSTSETLAAT PKAVKVVMDE TNRKAHWTVR H
Length

401

Mol. Wt

39.882 kDa

pI

5.6 (calculated)

Extinction coefficient

11,460 - 11,710 (calc based on 4 Y, 1 W, and 2 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
edit table
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_orf-401 taxon=10710 </beststructure>

Models

View models at:

edit table

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structure figures

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes
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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.0 1.1 1.2 Hendrix, RW & Duda, RL (1992) Bacteriophage lambda PaPa: not the mother of all lambda phages. Science 258 1145-8 PubMed

Categories

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