opgB:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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phosphoglycerol transferase I<ref name='LIB:Riley_2006'/>, B4359<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjjO <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MdoB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''phosphoglycerol transferase I<ref name='LIB:Riley_2006'/>, B4359<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjjO <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MdoB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4349, JW5794, mdoB, yjjO, b4359''
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!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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{|  id="O46ab2f4731712"  class=" tableEdit GO_table_product dataTable"   
{|  id="O46ab2f4731712"  class=" tableEdit GO_table_product dataTable"   
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46ab2f6352747"  class=" tableEdit Product_interactions_table dataTable"   
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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{|  id="E46ab2f6424e91"  class=" tableEdit Product_localization_table"   
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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!align=left {{table heading style}} |Name
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View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://www.proteinmodelportal.org/query/uniprot/P39401 Protein Model Portal]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P39401 PSI-PRED (P39401)]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P39401 Genomes TO Protein (P39401)] (GTOP)
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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****************************************************************************************** -->{{Gene_accessions_help}}
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{|   id="Q46ab2f67bace5"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46ab2f67bace5"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/protein/90111741 GI:90111741]
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Escherichia coli str. K-12 substr. MG1655
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[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/protein/NP_418779.2 GeneID:948888]
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Escherichia coli str. K-12 substr. MG1655
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[[ASAP]]
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ASAP:ABE-0014297
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
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[http://www.uniprot.org/uniprot/P39401 UniProtKB/Swiss-Prot:P39401]
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Escherichia coli str. K-12 substr. MG1655
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[[EcoCyc]]
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EcoCyc:EG12591
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=PGLYCEROLTRANSI-MONOMER EcoCyc:PGLYCEROLTRANSI-MONOMER]
EcoGene:EG12591
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
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[[uniprot:P39401|UniProt:P39401]]
[http://www.ncbi.nlm.nih.gov/gene?term=948888 GeneID:948888]
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Escherichia coli str. K-12 substr. MG1655
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
[[RegulonDB]]
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RegulonDB:ECK120002326
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
[[EchoBASE]]
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_418779 RefSeq:NP_418779]
EchoBASE:EB2476
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 16:54, 5 October 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

OpgB

Synonyms

phosphoglycerol transferase I[1], B4359[2][1], YjjO [2][1], MdoB[2][1] , ECK4349, JW5794, mdoB, yjjO, b4359

Product description

phosphoglycerol transferase I[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017849

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017850

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01070

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020881

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000917

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017849

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017850

P

Seeded from EcoCyc (v14.0)

complete

GO:0008484

sulfuric ester hydrolase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000917

F

Seeded from EcoCyc (v14.0)

complete

GO:0008960

phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01070

F

Seeded from EcoCyc (v14.0)

complete

GO:0008960

phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020881

F

Seeded from EcoCyc (v14.0)

complete

GO:0008960

phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.8.20

F

Seeded from EcoCyc (v14.0)

complete

GO:0009250

glucan biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01070

P

Seeded from EcoCyc (v14.0)

complete

GO:0009250

glucan biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020881

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLIYAWKAGR NTWWFAATLT VLGLFVVLNI TLFASDYFTG DGINDAVLYT LTNSLTGAGV
SKYILPGIGI VLGLTAVFGA LGWILRRRRH HPHHFGYSLL ALLLALGSVD ASPAFRQITE
LVKSQSRDGD PDFAAYYKEP SKTIPDPKLN LVYIYGESLE RTYFDNEAFP DLTPELGALK
NEGLDFSHTQ QLPGTDYTIA GMVASQCGIP LFAPFEGNAS ASVSSFFPQN ICLGDILKNS
GYQNYFVQGA NLRFAGKDVF LKSHGFDHLY GSEELKSVVA DPHYRNDWGF YDDTVLDEAW
KKFEELSRSG QRFSLFTLTV DTHHPDGFIS RTCNRKKYDF DGKPNQSFSA VSCSQENIAT
FINKIKASPW FKDTVIVVSS DHLAMNNTAW KYLNKQDRNN LFFVIRGDKP QQETLAVKRN
TMDNGATVLD ILGGDNYLGL GRSSLSGQSM SEIFLNIKEK TLAWKPDIIR LWKFPKEMKE
FTIDQQKNMI AFSGSHFRLP LLLRVSDKRV EPLPESEYSA PLRFQLADFA PRDNFVWVDR
CYKMAQLWAP ELALSTDWCV SQGQLGGQQI VQHVDKTTWQ GKTAFKDTVI DMARYKGNVD
TLKIVDNDIR YKADSFIFNV AGAPEEVKQF SGISRPESWG RWSNAQLGDE VKIEYKHPLP
KKFDLVITAK AYGNNASRPI PVRVGNEEQT LVLGNEVTTT TLHFDNPTDA DTLVIVPPEP
VSTNEGNILG HSPRKLGIGM VEIKVVEREG
Length

750

Mol. Wt

84.117 kDa

pI

6.6 (calculated)

Extinction coefficient

125,250 - 126,000 (calc based on 25 Y, 16 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

162..561

PF00884 Sulfatase

PMID:19920124[4]

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<motif_map/>

tmhmm.php?gene=mdoB&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=mdoB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111741

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948888

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014297

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P39401

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12591

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12591

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948888

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002326

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2476

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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