sbcC:Quickview: Difference between revisions
Jump to navigation
Jump to search
touch QV table |
touch |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 23: | Line 23: | ||
* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | ||
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
{| id="C49b024a6d0194" class=" tableEdit New_Quickview_Table" | {| id="C49b024a6d0194" class=" tableEdit New_Quickview_Table" | ||
| Line 33: | Line 33: | ||
!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK0391, b0397, JW0387, rmuA''<ref name='LIB:Riley_2006'/> | ''ECK0391, b0397, JW0387, rmuA''<ref name='LIB:Riley_2006'/>, rmuA'' | ||
|- | |- | ||
!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
| Line 45: | Line 45: | ||
!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
exonuclease, dsDNA, ATP-dependent<ref name='LIB:Riley_2006'/>, B0397<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SbcC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''exonuclease, dsDNA, ATP-dependent<ref name='LIB:Riley_2006'/>, B0397<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SbcC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0391, JW0387, rmuA, b0397'' | ||
|- | |- | ||
!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
| Line 65: | Line 65: | ||
!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
|| | || | ||
[http://porteco.org/AjaxSearch.jsp?searchString=sbcC&s=search | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=sbcC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10927]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000916&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=sbcC&loc=MG1655%3A414977..411831,W3110%3A414977..411831,DH10B%3A354308..351162,REL606%3A384176..381030,BW2952%3A314590..317736]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=314590&end=317736&gene=sbcC&aa=mkilslrlknlnslkgewkidftrepfasnglfaitgptgagkttlldaiclalyhetprlsnvsqsqndlmtrdtaeclaevefevkgeayrafwsqnrarnqpdgnlqvprvelarcadgkiladkvkdkleltatltgldygrftrsmllsqgqfaaflnakpkeraelleeltgteiygqisamvfeqhksarteleklqaqasgvtlltpeqvqsltaslqvltdeekqlitaqqqeqqslnwltrqdelqqeasrrqqalqqalaeeekaqpqlaalslaqparnlrphweriaehsaalahirqqieevntrlqstmalrasirhhaakqsaelqqqqqslntwlqehdrfrqwnnepagwraqfsqqtsdrehlrqwqqqlthaeqklnalaaitltltadevatalaqhaeqrplrqhlvalhgqivpqqkrlaqlqvaiqnvtqeqtqrnaalnemrqrykektqqladvkticeqeariktleaqraqlqagqpcplcgstshpaveayqalepgvnqsrllalenevkklgeegatlrgqldaitkqlqrdeneaqslrqdeqaltqqwqavtaslnitlqplddiqpwldaqdeherqlrllsqrhelqgqiaahnqqiiqyqqqieqrqqlllttltgyaltlpqedeeeswlatrqqeaqswqqrqneltalqnriqqltpiletlpqsdelphceetvvlenwrqvheqclalhsqqqtlqqqdvlaaqslqkaqaqfdtalqasvfddqqaflaalmdeqtltqleqlkqnlenqrrqaqtlvtqtaetlaqhqqhrpddglaltvtveqiqqelaqthqklrenttsqgeirqqlkqdadnrqqqqtlmqqiaqmtqqvedwgylnsligskegdkfrkfaqgltldnlvhlanqqltrlhgryllqrkasealevevvdtwqadavrdtrtlsggesflvslalalalsdlvshktridslfldegfgtldsetldtaldaldalnasgktigvishveamkeripvqikvkkinglgysklestfavk]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sbcC+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=sbcC]] | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Latest revision as of 21:46, 27 May 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
sbcC |
|---|---|
| Gene Synonym(s) |
ECK0391, b0397, JW0387, rmuA[1], rmuA |
| Product Desc. |
ATP-dependent dsDNA exonuclease[2][3]; Component of SbcCD ATP-dependent dsDNA exonuclease[3] DNA hairpin dsDNA 3'-exonuclease SbcCD, Mn(2+), ATP-dependent; ATP-independent 5' ssDNA endonuclease; required for recombinational repair of dsDNA breaks; cosuppressor with sbcB of recB recC mutations; heterodimeric[4] |
| Product Synonyms(s) |
exonuclease, dsDNA, ATP-dependent[1], B0397[2][1], SbcC[2][1] , ECK0391, JW0387, rmuA, b0397 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
SbcCD can cleave dsDNA 5' ends sealed by a hairpin or by covalent linko a protein. SbcCD limits recombination between short inverted repeats, but is also reported to be required for palindrome-stimulated deletion. SbcCD protein forms a large 1.2 megadalton complex. Second amino acid was sequenced in protein as Gly, but in all DNA samples is a Lys codon. Coiled coil protein.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.