Cis Element:Phage lambda attP: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''lambda attP''
''lambda attP''
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!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
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!align=left |Function
!align=left {{table_heading_style}} |Function
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phage attachment site
phage attachment site
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!align=left |Location
!align=left {{table_heading_style}} |Location
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approximately nt 27 571 - 27 813 (PMID:6246439)
approximately nt 27 571 - 27 813 (PMID:6246439)
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''attP'' core sequence located at nt 27 721 - 27 735 (PMID:6246439)
''attP'' core sequence located at nt 27 721 - 27 735 (PMID:6246439)
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!align=left |SO terms
!align=left {{table_heading_style}} |SO terms
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!|Partner Type!!Partner!!Notes!!References!!Evidence
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!|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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!|Resource!!Resource Type!!Source!!Notes/Reference
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!|Database!!Accession!!Notes
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[[EcoCyc]]
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EcoCyc:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:40, 27 May 2013

Cis element summary table

Standard Name

lambda attP

Synonyms
Function

phage attachment site

Location

approximately nt 27 571 - 27 813 (PMID:6246439[1])

attP core sequence located at nt 27 721 - 27 735 (PMID:6246439[1])

SO terms


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Notes

In the free phage, the att site is referred to as attP (phage attachment site) while the corresponding site in a host genome is called attB (bacterial attachment site). After integration occurs to create a prophage, these sites are then known as attL (left end of prophage) and attR (right end of prophage). Reviewed in Lambda II.[2]

Location and Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

Phage Lambda (NC_001416)

NC_001416: 27571..27813
gbrowse_img.php?coord=27521..27863&genome=bacteriophage_lambda&name=NC_001416&trackset=0&width=300&.png

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Notes

Interactions

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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Phage Lambda Int protein

PMID:159130[3], PMID:2958633[4]

Protein

E. coli host protein IHF (Integration Host Factor)

PMID:2958633[4]

Protein

Phage Lambda Xis protein

PMID:3156374[5]


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Notes

Mutant alleles and phenotypes

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Allele Nt change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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Notes

Accessions

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 Hsu, PL et al. (1980) The lambda phage att site: functional limits and interaction with Int protein. Nature 285 85-91 PubMed
  2. ↑ Edited by Roger W. Hendrix, Jeffrey W. Roberts, Franklin W. Stahl and Robert A. Weisberg (1983) Lambda II (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)
  3. ↑ Ross, W et al. (1979) Interaction of int protein with specific sites on lambda att DNA. Cell 18 297-307 PubMed
  4. ↑ 4.0 4.1 Thompson, JF et al. (1987) Protein-protein interactions in a higher-order structure direct lambda site-specific recombination. J. Mol. Biol. 195 481-93 PubMed
  5. ↑ Yin, S et al. (1985) Interaction of the lambda site-specific recombination protein Xis with attachment site DNA. Proc. Natl. Acad. Sci. U.S.A. 82 1040-4 PubMed

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