metK:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O46abef00a8e3c"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417417&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417417&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11964:SF0 PTHR11964:SF0]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55973 SUPERFAMILY:55973]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55973 SUPERFAMILY:55973]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55973 SUPERFAMILY:55973]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00438 PF00438  S-adenosylmethionine synthetase, N-terminal domain]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
|-
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00438 PFAM:PF00438]
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02772 PF02772  S-adenosylmethionine synthetase, central domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02773 PF02773  S-adenosylmethionine synthetase, C-terminal domain]
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[[EcoCyc]]
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EcoCyc:EG10589
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10589
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120000582
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB0584
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0009650
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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{{BacktoTop}}

Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000023437 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000033210 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G36880 (score: 1.000; bootstrap: 100%)
  • AT3G17390 (score: 1.000; bootstrap: 100%)
  • AT1G02500 (score: 0.848)
  • AT4G01850 (score: 0.845)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000031255 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000027808 (score: 0.617)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038995 (score: 1.000; bootstrap: 100%)
  • WBGene00038996 (score: 0.861)
  • WBGene00035751 (score: 0.520)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00015540 (score: 1.000; bootstrap: 100%)
  • WBGene00015538 (score: 0.865)
  • WBGene00006416 (score: 0.843)
  • WBGene00013652 (score: 0.610)
  • WBGene00008205 (score: 0.585)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000011509 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000023298 (score: 0.725)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016721 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-6127 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-505 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050327-6 (score: 0.547)
  • ZDB-GENE-050327-6 (score: 0.547)
  • ZDB-CDNA-040425-506 (score: 0.169)
  • ZDB-GENE-030131-2049 (score: 0.169)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230070 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0005278 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15421-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000003899 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000024750 (score: 0.426)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000303147 (score: 1.000; bootstrap: 100%)
  • ENSP00000280867 (score: 0.732)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024512 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000005930 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019473 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000001856 (score: 0.683)

From Inparanoid:20070104

Mus musculus

  • MGI:88017 (score: 1.000; bootstrap: 100%)
  • MGI:2443731 (score: 0.708)

From Inparanoid:20070104

Oryza gramene

  • Q4LB21 (score: 1.000; bootstrap: 100%)
  • Q9LGU6 (score: 0.906)
  • Q6AVZ2 (score: 0.897)
  • P46611 (score: 0.897)
  • Q8VXC5 (score: 0.894)
  • Q7F660 (score: 0.835)
  • P93438 (score: 0.835)
  • Q4LB24 (score: 0.818)
  • Q4LB23 (score: 0.815)
  • P50299 (score: 0.813)
  • Q4LB22 (score: 0.793)
  • Q8W531 (score: 0.207)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000004677 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000020814 (score: 0.055)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018170 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000015190 (score: 0.384)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR502C (score: 1.000; bootstrap: 100%)
  • YLR180W (score: 0.842)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC14F55c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000150744 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000165612 (score: 0.661)
  • NEWSINFRUP00000165342 (score: 0.400)
  • NEWSINFRUP00000160504 (score: 0.365)
  • NEWSINFRUP00000136500 (score: 0.229)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016485001 (score: 1.000; bootstrap: 100%)
  • GSTENP00017321001 (score: 0.656)
  • GSTENP00029452001 (score: 0.603)
  • GSTENP00022288001 (score: 0.372)
  • GSTENP00025261001 (score: 0.242)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000007635 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000002716 (score: 0.510)

From Inparanoid:20070104

Shigella flexneri

METK

From SHIGELLACYC

E. coli O157

METK

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11964:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:55973

Superfamily (EcoliWiki Page)

SUPERFAMILY:55973

Superfamily (EcoliWiki Page)

SUPERFAMILY:55973

Pfam (EcoliWiki Page)

PF00438 S-adenosylmethionine synthetase, N-terminal domain

Pfam (EcoliWiki Page)

PF02772 S-adenosylmethionine synthetase, central domain

Pfam (EcoliWiki Page)

PF02773 S-adenosylmethionine synthetase, C-terminal domain

EcoCyc

EcoCyc:EG10589

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10589

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000582

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0584

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009650

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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