plaP:Evolution: Difference between revisions

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Evolution

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000016290 (score: 1.000; bootstrap: 100%) ENSANGP00000016984 (score: 0.339)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000012050 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00016806 (score: 1.000; bootstrap: 100%) WBGene00017747 (score: 0.456) WBGene00015197 (score: 0.455)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000018906 (score: 1.000; bootstrap: 100%) ENSCINP00000016866 (score: 0.384) ENSCINP00000002795 (score: 0.277)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-030919-2 (score: 1.000; bootstrap: 86%) ZDB-CDNA-041114-206 (score: 0.303) ZDB-GENE-041114-206 (score: 0.303) ZDB-CDNA-041212-7 (score: 0.300) ZDB-GENE-041212-5 (score: 0.300)	From Inparanoid:20070104
Dictyostelium discoideum	DDB0185190 (score: 1.000; bootstrap: 89%) DDB0189300 (score: 1.000; bootstrap: 82%) DDB0205912 (score: 0.262)	From Inparanoid:20070104
Mus musculus	MGI:2146512 (score: 1.000; bootstrap: 100%) MGI:88117 (score: 0.314) MGI:99828 (score: 0.295) MGI:1100521 (score: 0.294) MGI:3040688 (score: 0.229)	From Inparanoid:20070104
Oryza gramene	Q7X636 (score: 1.000; bootstrap: 87%) Q53QH5 (score: 0.448) Q9LD96 (score: 0.282) Q5Z6S8 (score: 0.266) Q6AST5 (score: 0.208)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPCC5843 (score: 1.000; bootstrap: 64%) SPCC744 (score: 0.493) SPAC10391 (score: 0.441) SPBC15C44c (score: 0.210) SPAC11D38c (score: 0.167) SPAPB24D32c (score: 0.148) SPAC90 (score: 0.068) SPCC7943 (score: 0.052)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000140033 (score: 1.000; bootstrap: 100%) NEWSINFRUP00000132890 (score: 0.503) NEWSINFRUP00000151033 (score: 0.502) NEWSINFRUP00000136276 (score: 0.311) NEWSINFRUP00000135371 (score: 0.302)	From Inparanoid:20070104
Shigella flexneri	YEEF	From SHIGELLACYC
E. coli O157	YEEF	From ECOO157CYC
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00324 Amino acid permease
EcoCyc	EcoCyc:EG11896	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11896	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001826	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1842	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0006696	Escherichia coli str. K-12 substr. MG1655
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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

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 From ECOO157CYC
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-[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
+[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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-[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00324 PFAM:PF00324]
+[http://pfam.janelia.org/family/PF00324 PF00324  Amino acid permease]
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+|-
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+[[EcoCyc]]
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+EcoCyc:EG11896
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+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
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+[[EcoGene]]
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+EcoGene:EG11896
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+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
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+[[RegulonDB]]
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+RegulonDB:ECK120001826
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+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
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+[[EchoBASE]]
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+EchoBASE:EB1842
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+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
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+[[ASAP]]
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+ASAP:ABE-0006696
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+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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plaP:Evolution: Difference between revisions

Latest revision as of 08:33, 27 May 2013

Homologs in Other Organisms

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